Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPX92_RS11185 Genome accession   NZ_CP046802
Coordinates   1464228..1464860 (-) Length   210 a.a.
NCBI ID   WP_078926043.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459228..1469860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS11175 aceF 1460589..1462475 (+) 1887 WP_158117121.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPX92_RS11180 lpdA 1462729..1464156 (+) 1428 WP_078926042.1 dihydrolipoyl dehydrogenase -
  GPX92_RS11185 opaR 1464228..1464860 (-) 633 WP_078926043.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GPX92_RS11190 hpt 1465202..1465732 (+) 531 WP_078926044.1 hypoxanthine phosphoribosyltransferase -
  GPX92_RS11195 can 1465808..1466476 (-) 669 WP_078926045.1 carbonate dehydratase -
  GPX92_RS11200 - 1466806..1467729 (+) 924 WP_078926046.1 ABC transporter ATP-binding protein -
  GPX92_RS11205 - 1467729..1468499 (+) 771 WP_078926047.1 ABC transporter permease -
  GPX92_RS11210 panC 1468655..1469536 (-) 882 WP_078926048.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24217.79 Da        Isoelectric Point: 5.6489

>NTDB_id=408067 GPX92_RS11185 WP_078926043.1 1464228..1464860(-) (opaR) [Vibrio cincinnatiensis strain 2070-81]
MDASIEKRPRTRLSPQKRKQQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVRQFSNFL
TDQIDLDLDAKENMHNIASAMVNLAIDDCYWLKVWFEWSASTREEVWPLFVSSNKTNQLLIRNIFVKAIERGEVCAQLDA
ENLAMLFHGVCYSLFVQANRVRDEQKVCQLVNHYLDMLCIYNREHLSIAS

Nucleotide


Download         Length: 633 bp        

>NTDB_id=408067 GPX92_RS11185 WP_078926043.1 1464228..1464860(-) (opaR) [Vibrio cincinnatiensis strain 2070-81]
ATGGACGCATCTATTGAGAAACGCCCCAGAACACGGCTTTCTCCGCAAAAACGTAAACAACAACTCATGGAAATCGCACT
GGAAGTGTTTGCCAAACGAGGGATTGGTCGTGGAGGGCATGCAGATATCGCTGAAATTGCCCAAGTATCTGTGGCAACCG
TCTTTAACTACTTTCCTACTCGGGAAGATTTGGTGGACGATGTACTAACCTTTGTTGTTCGTCAATTCTCTAACTTTCTC
ACCGATCAGATTGATCTTGACCTCGATGCTAAAGAAAATATGCACAACATTGCTTCAGCAATGGTAAATCTGGCTATTGA
TGATTGTTATTGGCTAAAAGTATGGTTTGAATGGAGCGCTTCAACTCGAGAGGAAGTCTGGCCTTTATTTGTCTCGAGCA
ATAAAACGAACCAGTTATTGATTAGAAATATTTTTGTCAAAGCTATCGAGCGTGGTGAAGTTTGTGCTCAACTTGATGCC
GAAAATTTAGCGATGCTATTTCACGGCGTTTGTTATTCTCTCTTTGTACAAGCCAACCGAGTGCGTGATGAACAAAAAGT
CTGCCAGTTAGTCAACCATTATTTAGATATGCTGTGCATCTATAACCGAGAACATTTATCTATCGCCTCTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

78.218

96.19

0.752
  hapR Vibrio cholerae C6706

76.119

95.714

0.729
  hapR Vibrio cholerae strain A1552

76.119

95.714

0.729

Multiple sequence alignment