Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | GPX92_RS10135 | Genome accession | NZ_CP046802 |
| Coordinates | 1251532..1252125 (+) | Length | 197 a.a. |
| NCBI ID | WP_078926720.1 | Uniprot ID | A0A1T4QYC1 |
| Organism | Vibrio cincinnatiensis strain 2070-81 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1246532..1257125
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX92_RS10120 | oxyR | 1246961..1247851 (+) | 891 | WP_078926723.1 | DNA-binding transcriptional regulator OxyR | - |
| GPX92_RS10125 | - | 1247901..1250378 (-) | 2478 | WP_158117085.1 | penicillin-binding protein 1A | - |
| GPX92_RS10130 | pilM | 1250520..1251542 (+) | 1023 | WP_078926721.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPX92_RS10135 | pilN | 1251532..1252125 (+) | 594 | WP_078926720.1 | PilN domain-containing protein | Machinery gene |
| GPX92_RS10140 | pilO | 1252118..1252708 (+) | 591 | WP_078926719.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPX92_RS10145 | pilP | 1252698..1253216 (+) | 519 | WP_078926718.1 | pilus assembly protein PilP | Machinery gene |
| GPX92_RS10150 | pilQ | 1253241..1254962 (+) | 1722 | WP_078926717.1 | type IV pilus secretin PilQ | Machinery gene |
| GPX92_RS10155 | aroK | 1255149..1255667 (+) | 519 | WP_078926716.1 | shikimate kinase AroK | - |
| GPX92_RS10160 | aroB | 1255695..1256786 (+) | 1092 | WP_078926715.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 22629.04 Da Isoelectric Point: 9.7503
>NTDB_id=408058 GPX92_RS10135 WP_078926720.1 1251532..1252125(+) (pilN) [Vibrio cincinnatiensis strain 2070-81]
MLHNINLLPWREVQREAYRQHFIHLLILGVLLALGVQGVAGSYLEQQKQQQQGRLDFLNQHIRQLDERLHALKVTEQEHK
ALLTRLKVVEALQQKRNKSTDFMHLMPELIPEGVYVDKIKMNGQEVEMNGISDSTARLATMLDNLEKSPQLSAVGMHSIV
SGNRRFGKQFQSFKVSFLFHTSDQVVQKPAQKEASHD
MLHNINLLPWREVQREAYRQHFIHLLILGVLLALGVQGVAGSYLEQQKQQQQGRLDFLNQHIRQLDERLHALKVTEQEHK
ALLTRLKVVEALQQKRNKSTDFMHLMPELIPEGVYVDKIKMNGQEVEMNGISDSTARLATMLDNLEKSPQLSAVGMHSIV
SGNRRFGKQFQSFKVSFLFHTSDQVVQKPAQKEASHD
Nucleotide
Download Length: 594 bp
>NTDB_id=408058 GPX92_RS10135 WP_078926720.1 1251532..1252125(+) (pilN) [Vibrio cincinnatiensis strain 2070-81]
ATGCTGCATAACATTAATTTGTTGCCGTGGCGAGAAGTACAGCGAGAAGCCTATCGGCAGCATTTCATCCATTTATTAAT
CTTAGGCGTACTTTTAGCGCTGGGCGTGCAAGGGGTGGCGGGAAGCTATCTAGAGCAGCAGAAGCAACAGCAGCAGGGGC
GACTGGATTTTCTTAACCAGCATATTCGCCAGTTAGATGAACGCCTTCATGCTTTAAAAGTGACAGAGCAAGAACATAAA
GCCTTATTAACCCGTTTAAAAGTGGTGGAGGCTTTGCAACAGAAACGCAATAAAAGTACTGACTTTATGCACCTGATGCC
GGAGTTAATTCCTGAAGGCGTCTATGTCGATAAAATCAAGATGAATGGGCAAGAGGTCGAAATGAACGGTATTAGCGATA
GTACTGCGCGTTTGGCGACCATGTTGGATAATTTGGAAAAATCGCCTCAGTTATCTGCAGTGGGAATGCACTCGATTGTG
TCGGGCAATCGTCGCTTTGGTAAGCAGTTTCAGAGTTTTAAAGTCTCTTTCCTCTTTCATACTTCCGATCAAGTGGTTCA
AAAGCCCGCTCAAAAGGAGGCTTCTCATGACTAA
ATGCTGCATAACATTAATTTGTTGCCGTGGCGAGAAGTACAGCGAGAAGCCTATCGGCAGCATTTCATCCATTTATTAAT
CTTAGGCGTACTTTTAGCGCTGGGCGTGCAAGGGGTGGCGGGAAGCTATCTAGAGCAGCAGAAGCAACAGCAGCAGGGGC
GACTGGATTTTCTTAACCAGCATATTCGCCAGTTAGATGAACGCCTTCATGCTTTAAAAGTGACAGAGCAAGAACATAAA
GCCTTATTAACCCGTTTAAAAGTGGTGGAGGCTTTGCAACAGAAACGCAATAAAAGTACTGACTTTATGCACCTGATGCC
GGAGTTAATTCCTGAAGGCGTCTATGTCGATAAAATCAAGATGAATGGGCAAGAGGTCGAAATGAACGGTATTAGCGATA
GTACTGCGCGTTTGGCGACCATGTTGGATAATTTGGAAAAATCGCCTCAGTTATCTGCAGTGGGAATGCACTCGATTGTG
TCGGGCAATCGTCGCTTTGGTAAGCAGTTTCAGAGTTTTAAAGTCTCTTTCCTCTTTCATACTTCCGATCAAGTGGTTCA
AAAGCCCGCTCAAAAGGAGGCTTCTCATGACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
67.232 |
89.848 |
0.604 |
| pilN | Vibrio campbellii strain DS40M4 |
62.57 |
90.863 |
0.569 |