Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPX92_RS01795 Genome accession   NZ_CP046801
Coordinates   419399..421447 (-) Length   682 a.a.
NCBI ID   WP_158116570.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 414399..426447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS01785 - 415097..417826 (+) 2730 WP_158116569.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  GPX92_RS01790 cqsA 418153..419334 (+) 1182 WP_154116182.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPX92_RS01795 cqsS 419399..421447 (-) 2049 WP_158116570.1 hybrid sensor histidine kinase/response regulator Regulator
  GPX92_RS01800 - 421484..424528 (-) 3045 WP_158116571.1 AAA family ATPase -
  GPX92_RS01805 - 424531..425673 (-) 1143 WP_158116572.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78906.82 Da        Isoelectric Point: 5.7769

>NTDB_id=408033 GPX92_RS01795 WP_158116570.1 419399..421447(-) (cqsS) [Vibrio cincinnatiensis strain 2070-81]
MNAIKKIYQYAEPNLTLVGWMGLIGFPVYYYVWAYLFPQPYESLGLRSFCSFLFAGIAFRHSLPKVLHRYLPVYYLFSIG
FCLPFFFFYMMLMNGWSTEWAMSFMASIFLHILLVHETKVMLMQALVASLAAYIIAYSVMDTEPSQLISLTYIPIFIFTY
VFGNLFYFRNQISHESKVSIAKSFGAGIAHEMRNPLSALKSSIDVFRSILPSTNSKNDNYTLTAQELAQLQEVLNHADEV
IHSGNETIDLLLTSIDQNRVSTSTFKKHSAAAIVNNAIRSFSYPKMLDKSRVFATIEDEFDFLGSDTLLKFALYNLLKNA
FYYQNSESFRIDIDVKRQAGKNLIIVRDNGVGIAPEQLDEIFKDFYTFGKNNSYGLGLPFCRKVMRSFGGSIHCRSVLGE
WTEFILTFPDYDSERVKQIKLDLMKSKSVLYIGEEDIIYHHLNELAFYQGFTMYSINVEEAIHREEFEFEFDIILVSLNK
LSSQWDKLSLLENKLHFTEAKIGYLYDKNHHYPVNISRYLTVYPIEMHQLLLEHSLIMDQLFFEIEENSANRNQIKTPEV
CYQRRILLVDDNESLRIFSALLLEKQGYEVFQANNGKQALEILSSESVDLIIMDLDMPVMNGFDTTKAIRHLDADYHHVP
IIGYTGDDRSETISEIYKIGMNDYIVKPADKEILLQKIANWL

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=408033 GPX92_RS01795 WP_158116570.1 419399..421447(-) (cqsS) [Vibrio cincinnatiensis strain 2070-81]
ATGAATGCAATAAAAAAAATATACCAATATGCAGAGCCAAATCTAACGTTAGTCGGATGGATGGGGCTGATCGGTTTTCC
CGTTTATTACTATGTTTGGGCCTATCTTTTCCCGCAGCCATATGAGTCACTTGGGCTGCGTAGTTTTTGTTCGTTCCTGT
TTGCCGGTATCGCTTTTCGCCACTCTTTGCCTAAGGTGTTACACCGTTATTTACCCGTATATTATCTGTTCTCTATTGGA
TTTTGCTTACCTTTTTTCTTTTTCTATATGATGTTAATGAATGGCTGGTCCACAGAGTGGGCCATGTCCTTTATGGCCTC
TATTTTTTTACATATTTTACTGGTGCATGAAACGAAAGTGATGCTAATGCAAGCTTTGGTTGCATCACTCGCTGCTTATA
TTATTGCTTATTCTGTAATGGATACTGAACCTAGCCAGCTTATTTCATTAACTTATATTCCAATTTTTATTTTTACCTAT
GTATTTGGTAACTTATTTTATTTTCGGAATCAGATTTCTCATGAAAGCAAAGTGTCCATTGCAAAGTCTTTTGGTGCAGG
GATTGCCCATGAGATGCGTAACCCGCTGAGTGCATTAAAGTCATCGATAGATGTCTTCCGTTCTATTTTGCCGAGCACGA
ACTCAAAAAATGATAATTATACATTAACAGCTCAAGAGTTAGCCCAACTGCAAGAGGTGTTAAATCATGCCGATGAAGTG
ATCCATTCGGGTAATGAGACCATCGATTTACTACTGACCTCGATAGATCAAAATCGAGTGTCGACATCAACGTTCAAAAA
GCATTCAGCCGCCGCAATCGTAAATAATGCGATCCGTTCATTTTCCTATCCAAAAATGTTAGACAAGTCGAGGGTGTTTG
CAACGATTGAAGATGAGTTTGATTTTTTAGGTAGTGATACCTTATTAAAGTTTGCCTTGTATAATCTATTGAAGAATGCA
TTTTATTACCAAAATAGTGAGTCTTTTAGAATTGATATTGACGTGAAGCGGCAAGCTGGAAAAAATCTGATCATAGTCAG
AGATAATGGTGTTGGAATCGCACCTGAGCAACTGGATGAAATTTTTAAAGACTTTTATACGTTTGGTAAAAATAATAGTT
ATGGCTTAGGGCTACCTTTTTGCCGAAAAGTGATGCGCTCTTTTGGTGGGAGTATCCATTGTCGTTCAGTCTTGGGAGAA
TGGACCGAATTTATATTGACCTTTCCTGATTATGATTCTGAGCGAGTAAAACAAATTAAATTGGATTTAATGAAGTCTAA
ATCTGTTCTCTATATTGGTGAGGAGGACATTATTTACCACCATTTGAATGAACTGGCTTTTTATCAAGGCTTTACAATGT
ATTCTATCAATGTTGAAGAAGCGATACATCGAGAAGAATTTGAATTCGAGTTTGATATTATTCTGGTTAGTCTAAATAAA
CTCTCATCACAATGGGATAAGCTGAGTTTATTAGAAAATAAGTTACATTTTACAGAGGCGAAAATTGGATATTTATATGA
TAAGAATCATCATTATCCGGTTAATATTTCACGTTATTTAACCGTGTATCCAATTGAAATGCACCAGCTATTGCTTGAAC
ATTCATTAATAATGGATCAGCTGTTTTTTGAAATAGAGGAAAATTCGGCTAATAGAAATCAAATTAAAACGCCTGAAGTC
TGCTATCAACGGCGAATCTTATTGGTGGATGATAATGAATCATTGCGTATTTTTTCTGCATTATTATTGGAAAAACAAGG
CTATGAAGTTTTTCAGGCCAATAATGGTAAACAGGCATTAGAGATTCTTTCAAGTGAAAGTGTGGATTTAATTATCATGG
ACCTTGATATGCCGGTAATGAATGGTTTCGATACCACAAAGGCTATCCGTCATTTAGATGCAGACTATCATCATGTTCCT
ATTATTGGATATACAGGCGATGATCGTTCAGAAACGATTTCTGAGATTTACAAAATAGGCATGAATGATTATATCGTTAA
GCCAGCAGATAAAGAGATTCTTTTGCAAAAAATAGCAAACTGGTTATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

56.223

100

0.563

Multiple sequence alignment