Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPX92_RS01790 Genome accession   NZ_CP046801
Coordinates   418153..419334 (+) Length   393 a.a.
NCBI ID   WP_154116182.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 413153..424334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS01780 - 414074..415090 (+) 1017 WP_158116568.1 tripartite tricarboxylate transporter substrate binding protein -
  GPX92_RS01785 - 415097..417826 (+) 2730 WP_158116569.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  GPX92_RS01790 cqsA 418153..419334 (+) 1182 WP_154116182.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPX92_RS01795 cqsS 419399..421447 (-) 2049 WP_158116570.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43851.23 Da        Isoelectric Point: 6.9848

>NTDB_id=408032 GPX92_RS01790 WP_154116182.1 418153..419334(+) (cqsA) [Vibrio cincinnatiensis strain 2070-81]
MKYDAKHTRLPEFIQTRLNLFIHDLIESNQNGKHLVLGKRPAENDIILQSNDYLSLSNHPVIKARLKKAIDESQDSLFMS
GIFLQDTHTKPPLEQQLADFAQFDTCLLSQSGWNANTALLQTICSPETPVYIDFFAHMSMWEGARYANAQLHPFMHNNCH
HLIKLIKRHGPGLIAVDSIYSTIGTMAPLTELVTIAKQHHCAILVDESHSLGVYGPHGSGLLCELGLSGQVDFMTVSLAK
TFAYRAGAIWANNNVDKCIPFVGYPAIFSSTILPYEVEALSATLAVIQESDDKRDQLARHAKTLRSALVKLGFTIRSQSQ
IIALETGDERNTEKVRDYLEEHGVFGAVFCRPATAKNKNIIRLSLNSSLTQEEIDKIIHVCGLAINNPNLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=408032 GPX92_RS01790 WP_154116182.1 418153..419334(+) (cqsA) [Vibrio cincinnatiensis strain 2070-81]
ATGAAATACGATGCCAAACATACGCGTCTACCTGAGTTTATTCAAACGCGTTTAAACCTATTTATCCATGATCTTATTGA
AAGCAATCAAAATGGAAAGCATCTTGTATTAGGGAAAAGACCCGCAGAGAATGACATTATTCTACAAAGTAATGACTACC
TCAGCTTATCTAATCATCCTGTGATTAAAGCTCGACTGAAAAAGGCCATTGATGAAAGTCAGGATAGCCTTTTTATGTCA
GGAATTTTTTTACAAGATACTCACACTAAACCACCACTAGAGCAGCAGTTAGCCGACTTTGCTCAATTTGATACTTGCTT
ATTATCGCAATCAGGTTGGAATGCAAATACCGCGTTATTACAAACCATCTGCTCTCCAGAAACGCCGGTCTATATTGATT
TTTTTGCTCATATGTCCATGTGGGAAGGAGCACGATACGCCAATGCACAATTGCACCCCTTCATGCATAATAATTGTCAT
CATTTAATTAAGTTAATAAAAAGACACGGCCCTGGGCTGATTGCTGTTGATTCTATCTATAGCACCATAGGGACTATGGC
ACCATTGACAGAGCTGGTCACGATTGCAAAACAGCACCATTGCGCAATTTTAGTGGATGAATCTCATTCATTAGGCGTTT
ATGGGCCACATGGTTCGGGGCTACTATGTGAGCTAGGGTTATCAGGGCAAGTCGACTTTATGACGGTCAGCCTAGCCAAA
ACCTTCGCCTATCGAGCGGGGGCAATATGGGCAAACAATAATGTGGATAAATGTATTCCCTTTGTTGGTTACCCAGCTAT
CTTTAGCTCGACCATTCTTCCCTATGAAGTCGAAGCCTTAAGTGCAACCTTAGCGGTGATACAAGAGTCCGATGATAAAC
GGGATCAACTTGCTCGTCATGCCAAAACATTAAGATCAGCATTAGTTAAATTAGGATTTACTATACGTAGTCAATCTCAA
ATTATTGCTTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCAGAGATTACTTAGAAGAACATGGGGTTTTTGGTGC
AGTGTTCTGTCGTCCTGCGACCGCCAAGAACAAAAATATTATCCGTTTATCTCTGAATAGTTCACTCACTCAAGAAGAGA
TAGACAAAATTATTCATGTTTGTGGCTTAGCCATCAACAATCCAAACTTATATTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

67.013

97.964

0.656

Multiple sequence alignment