Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   H0N27_RS03115 Genome accession   NZ_CP059039
Coordinates   648056..648418 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain A118     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643056..653418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N27_RS03100 (H0N27_03100) - 645550..646668 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  H0N27_RS03105 (H0N27_03105) - 646728..647366 (-) 639 WP_171945457.1 hypothetical protein -
  H0N27_RS03110 (H0N27_03110) pilG 647649..648032 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  H0N27_RS03115 (H0N27_03115) pilH 648056..648418 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  H0N27_RS03120 (H0N27_03120) - 648479..649015 (+) 537 WP_000729762.1 chemotaxis protein CheW -
  H0N27_RS03125 (H0N27_03125) - 649062..651140 (+) 2079 WP_168726940.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=408031 H0N27_RS03115 WP_000101096.1 648056..648418(+) (pilH) [Acinetobacter baumannii strain A118]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=408031 H0N27_RS03115 WP_000101096.1 648056..648418(+) (pilH) [Acinetobacter baumannii strain A118]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392