Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | GPY18_RS17460 | Genome accession | NZ_CP046800 |
| Coordinates | 2229630..2230247 (-) | Length | 205 a.a. |
| NCBI ID | WP_024374317.1 | Uniprot ID | M1KD28 |
| Organism | Vibrio fluvialis strain 2012V-1235 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2224630..2235247
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY18_RS17450 | aceF | 2225930..2227822 (+) | 1893 | WP_158147133.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
| GPY18_RS17455 | lpdA | 2228081..2229508 (+) | 1428 | WP_020331989.1 | dihydrolipoyl dehydrogenase | - |
| GPY18_RS17460 | opaR | 2229630..2230247 (-) | 618 | WP_024374317.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| GPY18_RS17465 | hpt | 2230568..2231095 (+) | 528 | WP_020331991.1 | hypoxanthine phosphoribosyltransferase | - |
| GPY18_RS17470 | can | 2231145..2231813 (-) | 669 | WP_020331992.1 | carbonate dehydratase | - |
| GPY18_RS17475 | - | 2232156..2233073 (+) | 918 | WP_020331993.1 | ABC transporter ATP-binding protein | - |
| GPY18_RS17480 | - | 2233078..2233848 (+) | 771 | WP_020331995.1 | ABC transporter permease | - |
| GPY18_RS17485 | panC | 2233906..2234787 (-) | 882 | WP_158147134.1 | pantoate--beta-alanine ligase | - |
Sequence
Protein
Download Length: 205 a.a. Molecular weight: 23890.30 Da Isoelectric Point: 6.2346
>NTDB_id=408028 GPY18_RS17460 WP_024374317.1 2229630..2230247(-) (opaR) [Vibrio fluvialis strain 2012V-1235]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDIHAKENLTNITDEMVKLANEDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLVKNMFSKAIERGEVCEQHDP
EDLATLFHGVCYSLFVQANRVRDEGYMRKLVKSYLDMLCIYKRDH
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDIHAKENLTNITDEMVKLANEDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLVKNMFSKAIERGEVCEQHDP
EDLATLFHGVCYSLFVQANRVRDEGYMRKLVKSYLDMLCIYKRDH
Nucleotide
Download Length: 618 bp
>NTDB_id=408028 GPY18_RS17460 WP_024374317.1 2229630..2230247(-) (opaR) [Vibrio fluvialis strain 2012V-1235]
ATGGACGCATCTATAGAGAAACGCCCTAGAACGCGGCTATCTCCTCAAAAACGTAAACTCCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAAACGAGGCATTGGCCGTGGTGGTCATGCGGATATCGCAGAAATTGCTCAAGTTTCTGTCGCCACCG
TGTTCAACTACTTCCCTACTCGTGAAGATTTGGTCGACGACGTACTGACTTACGTGGTTCGCCAGTTTTCCAACTTCCTC
ACCGACAACATCGATCTCGATATTCACGCGAAAGAGAACCTCACCAACATCACCGATGAAATGGTTAAGCTGGCCAATGA
AGATTGCCACTGGCTGAAAGTGTGGTTTGAATGGAGCGCCTCGACGCGTGACGAAGTATGGCCACTGTTTGTATCCAGTA
ACCGTACCAACCAGTTGCTGGTGAAGAACATGTTCTCGAAAGCCATCGAGCGCGGTGAAGTGTGTGAACAGCACGACCCT
GAAGATCTGGCGACGCTGTTCCACGGTGTCTGCTACTCACTGTTTGTGCAAGCCAACCGCGTTCGCGATGAAGGCTACAT
GCGTAAACTGGTGAAAAGCTACCTGGACATGCTGTGCATCTATAAACGCGATCACTAA
ATGGACGCATCTATAGAGAAACGCCCTAGAACGCGGCTATCTCCTCAAAAACGTAAACTCCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAAACGAGGCATTGGCCGTGGTGGTCATGCGGATATCGCAGAAATTGCTCAAGTTTCTGTCGCCACCG
TGTTCAACTACTTCCCTACTCGTGAAGATTTGGTCGACGACGTACTGACTTACGTGGTTCGCCAGTTTTCCAACTTCCTC
ACCGACAACATCGATCTCGATATTCACGCGAAAGAGAACCTCACCAACATCACCGATGAAATGGTTAAGCTGGCCAATGA
AGATTGCCACTGGCTGAAAGTGTGGTTTGAATGGAGCGCCTCGACGCGTGACGAAGTATGGCCACTGTTTGTATCCAGTA
ACCGTACCAACCAGTTGCTGGTGAAGAACATGTTCTCGAAAGCCATCGAGCGCGGTGAAGTGTGTGAACAGCACGACCCT
GAAGATCTGGCGACGCTGTTCCACGGTGTCTGCTACTCACTGTTTGTGCAAGCCAACCGCGTTCGCGATGAAGGCTACAT
GCGTAAACTGGTGAAAAGCTACCTGGACATGCTGTGCATCTATAAACGCGATCACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
81.188 |
98.537 |
0.8 |
| hapR | Vibrio cholerae C6706 |
78.713 |
98.537 |
0.776 |
| hapR | Vibrio cholerae strain A1552 |
78.713 |
98.537 |
0.776 |