Detailed information NTG0408004

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY18_RS12765
• Genome accession: NZ_CP046800
• Coordinates: 1261085..1262071 (-)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain 2012V-1235
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1256085..1267071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY18_RS12745	recX	1256129..1256587 (-)	459	WP_055452611.1	recombination regulator RecX	-
GPY18_RS12750	recA	1256657..1257709 (-)	1053	WP_024374201.1	recombinase RecA	Machinery gene
GPY18_RS12755	pncC	1257882..1258370 (-)	489	WP_158146859.1	nicotinamide-nucleotide amidase	-
GPY18_RS12760	mutS	1258455..1261016 (+)	2562	WP_020429690.1	DNA mismatch repair protein MutS	-
GPY18_RS12765	rpoS	1261085..1262071 (-)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
GPY18_RS12770	nlpD	1262143..1263078 (-)	936	WP_020429687.1	murein hydrolase activator NlpD	-
GPY18_RS12775	-	1263078..1263704 (-)	627	WP_158146860.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY18_RS12780	surE	1263697..1264464 (-)	768	WP_158146861.1	5'/3'-nucleotidase SurE	-
GPY18_RS12785	truD	1264457..1265503 (-)	1047	WP_158146862.1	tRNA pseudouridine(13) synthase TruD	-
GPY18_RS12790	ispF	1265535..1266011 (-)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY18_RS12795	ispD	1266014..1266724 (-)	711	WP_158146863.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY18_RS12800	ftsB	1266721..1267002 (-)	282	WP_020330423.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=408004 GPY18_RS12765 WP_020429689.1 1261085..1262071(-) (rpoS) [Vibrio fluvialis strain 2012V-1235]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=408004 GPY18_RS12765 WP_020429689.1 1261085..1262071(-) (rpoS) [Vibrio fluvialis strain 2012V-1235]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTACTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGTAATCG
TGGCCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCTCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGTTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCTACGCTGGAAGAAGTCGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887