Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY18_RS05075 Genome accession   NZ_CP046799
Coordinates   1143317..1144498 (+) Length   393 a.a.
NCBI ID   WP_024375463.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2012V-1235     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1138317..1149498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS05060 - 1139130..1140119 (-) 990 WP_158146262.1 GTP-binding protein -
  GPY18_RS05065 clcA 1140580..1141977 (+) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY18_RS05070 - 1142142..1143098 (+) 957 WP_172558150.1 TDT family transporter -
  GPY18_RS05075 cqsA 1143317..1144498 (+) 1182 WP_024375463.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY18_RS05080 cqsS 1144534..1146582 (-) 2049 WP_020432686.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43544.44 Da        Isoelectric Point: 6.7319

>NTDB_id=407988 GPY18_RS05075 WP_024375463.1 1143317..1144498(+) (cqsA) [Vibrio fluvialis strain 2012V-1235]
MKTDAKNNRLPEFIQDRLNFFVRDLIQSNNNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIRARLKKAIDDTHDSVFMS
AIFLQDDESKPSLEHQLAEFAHFDSCLLSQSGWNANTALLQTICAPGSNVYIDFFAHMSMWEGARYANATIHPFMHNNCD
HLLKQIKRHGPGIIVVDSIYSTIGTIAPLAELVAIAKETGSAILVDESHSLGTHGKNGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNVNQCVPFVGYPAIFSSTILPYEIAALEATLDVIKSADERRERLFHNTHILSTGLNRLGINIRSQSQ
IIALETGDERNTEKVRDYLEDNGIFGAVFCRPATSKTKNIIRLSLTSSVTAEQIDRILSVCQNAVNRSDLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=407988 GPY18_RS05075 WP_024375463.1 1143317..1144498(+) (cqsA) [Vibrio fluvialis strain 2012V-1235]
ATGAAAACTGATGCCAAAAATAATCGGTTACCTGAGTTTATTCAGGACCGTTTAAATTTCTTCGTTCGCGATTTAATTCA
AAGTAATAACAACGGTAAACATCTGGTATTAGGTAAACGCCCTTCACAAGGCGATATTGTTTTACAAAGCAACGATTACC
TCAGTCTGGCTAACCATCCGTTGATTCGTGCGCGTTTGAAAAAGGCCATCGACGATACTCATGACAGCGTCTTTATGTCG
GCGATTTTCCTGCAGGATGACGAGTCAAAACCAAGCCTGGAACATCAACTGGCAGAGTTCGCTCACTTTGATTCCTGCCT
GCTGTCGCAATCGGGCTGGAATGCCAATACCGCTTTGCTGCAAACCATCTGCGCGCCAGGAAGTAATGTCTATATCGACT
TCTTTGCTCATATGTCTATGTGGGAAGGCGCTCGTTACGCGAATGCCACTATTCATCCGTTTATGCACAACAACTGCGAC
CATTTACTTAAGCAGATAAAACGCCATGGCCCGGGAATTATCGTCGTCGATTCAATCTACAGCACCATTGGCACCATTGC
GCCGTTAGCTGAATTAGTCGCGATCGCTAAAGAGACCGGCAGCGCTATTCTCGTTGATGAATCGCACTCTCTTGGCACCC
ACGGTAAGAATGGCGCAGGTTTGTTGGCAGAGTTAGGCTTATCTGATCAAGTGGATTTTATGACTGCAAGCCTGGCGAAA
ACGTTTGCTTATCGGGCAGGAGTTATCTGGGCAAATAATAATGTCAATCAGTGCGTTCCATTCGTGGGTTATCCGGCGAT
ATTCAGCTCAACAATTTTGCCTTATGAAATTGCAGCTCTCGAAGCAACGCTGGATGTGATTAAATCCGCCGATGAACGAC
GTGAGCGTTTATTTCATAATACACATATATTGTCTACGGGATTAAATAGACTTGGTATTAATATTCGCAGTCAATCGCAA
ATAATAGCGTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCCGCGATTATTTAGAAGATAACGGTATTTTTGGCGC
AGTATTTTGCCGACCAGCCACATCGAAAACTAAGAATATTATTCGCTTGTCATTAACCAGTTCTGTCACTGCTGAACAGA
TCGACCGTATTTTATCGGTCTGCCAAAATGCGGTAAACAGAAGCGACCTTTACTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

70.13

97.964

0.687

Multiple sequence alignment