Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY18_RS03855 Genome accession   NZ_CP046799
Coordinates   849762..850859 (+) Length   365 a.a.
NCBI ID   WP_024375537.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2012V-1235     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 844762..855859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS03825 - 845474..846442 (+) 969 WP_158146146.1 tyrosine-type recombinase/integrase -
  GPY18_RS03830 - 846604..846921 (-) 318 WP_020329287.1 DUF496 family protein -
  GPY18_RS03835 - 847111..847308 (+) 198 WP_020329288.1 hypothetical protein -
  GPY18_RS03840 - 847353..847988 (+) 636 WP_020433719.1 YceH family protein -
  GPY18_RS03845 - 847999..848280 (+) 282 WP_055453770.1 GIY-YIG nuclease family protein -
  GPY18_RS03850 - 848394..849550 (+) 1157 Protein_768 conjugal transfer protein TraF -
  GPY18_RS03855 luxP 849762..850859 (+) 1098 WP_024375537.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY18_RS03860 luxQ 850881..853448 (+) 2568 WP_020433712.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPY18_RS03865 - 853454..854134 (-) 681 WP_158146147.1 flagellar brake protein -
  GPY18_RS03870 - 854269..854793 (-) 525 WP_158146148.1 hypothetical protein -
  GPY18_RS03875 - 854946..855320 (-) 375 WP_020433707.1 NirD/YgiW/YdeI family stress tolerance protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41555.79 Da        Isoelectric Point: 5.0163

>NTDB_id=407985 GPY18_RS03855 WP_024375537.1 849762..850859(+) (luxP) [Vibrio fluvialis strain 2012V-1235]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTESLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALNEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKEDSSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=407985 GPY18_RS03855 WP_024375537.1 849762..850859(+) (luxP) [Vibrio fluvialis strain 2012V-1235]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAATCCGCAACAAAAAACGTTGACGGAGTCGCTTTCTAATGCGGTCAGAC
AATCGCCGGCAAGGCTGAATGTCAAACAAAGCAAGCCTGTGACCATTTCGGTCGTCTACCCGGGCCAGCAGATTTCAGAT
TACTGGATTCGCAACATTAAGGCGTTTGAGATGCGTCTGGAAGAGCTGGGGATTGAGTACCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCTTTGATGGAAGCGCTGAAAAACAACACCGATTATCTGATCTTTA
CTCTCGATACCACCCGTCACCGCAAGTTTATCGAGCATGTTCTCAGTTCCTCGCCAACCAAATTGATTCTTCAGAATATC
ACCACTCCGGTCAGAGACTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACCGGCGCGCAGCAACT
GGCGCAGTATTATCGTGAACACGTGCCTAAAGGCAGCAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGCGACG
CACGTGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGCTGGCCTCTTCTTACTACACCAAAGCCACT
CAGGAGAGCGGTTACGAAGCAACGCTCAACATCCTGAAAAACGATCCTGACATCAAATTTATTTATGCCTGTTCAACGGA
TGTGGCACTGGGTGCTGCACAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTCAACGGTTGGGGCGGTGGCTCGG
CAGAGCTTGAAGCGCTGAATGAAGGGCATCTGGATGTCACTGTCATGCGCATCAACGACGATACGGGTATTGCAATGGCG
GAAGCCATCAAACGCGACCTTGAAGGCGAGGCGGTGCCAGTGGTCTATTCCGGCGACTTTGAGATTGTCACCAAAGAAGA
TAGTTCGCAGAAAATCGATGTATTTAAGCAACGAGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.685

100

0.707

Multiple sequence alignment