Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY43_RS19755 Genome accession   NZ_CP046798
Coordinates   939975..941156 (-) Length   393 a.a.
NCBI ID   WP_158108581.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2013V-1001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 934975..946156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY43_RS19750 cqsS 937763..939814 (+) 2052 WP_158108580.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY43_RS19755 cqsA 939975..941156 (-) 1182 WP_158108581.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY43_RS19760 - 941374..942333 (-) 960 WP_158108582.1 TDT family transporter -
  GPY43_RS19765 clcA 942494..943891 (-) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY43_RS19770 - 944362..945357 (+) 996 WP_158108583.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43534.43 Da        Isoelectric Point: 6.7722

>NTDB_id=407979 GPY43_RS19755 WP_158108581.1 939975..941156(-) (cqsA) [Vibrio furnissii strain 2013V-1001]
MKSDAKNNRLPDSIQDRLNFFVRDLIESNQNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIKARLKQAIDTTHDSVFMS
AIFLQDDETKPSLEHQLAEFVNFDSCLLSQSGWNANTSLLQTVCAPGSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLRKQIQRHGPGLIVVDSIYSTIGTLAPLTELVHIAKETQCAILVDESHSLGTHGDNGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNANQCIPFVGYPAIFSSTILPYEIAALEATLEVIKSANDRRKNLFHNAQLLSQGLNKIGIHIRSQSQ
IIALETGDEKNTEKVRDYLEDNGVFGAVFCRPATSKTKNIIRLSLTSAVTEQQIDRILSVCHSAVKRGDMIFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=407979 GPY43_RS19755 WP_158108581.1 939975..941156(-) (cqsA) [Vibrio furnissii strain 2013V-1001]
ATGAAATCTGATGCCAAAAATAATCGGTTACCTGACTCGATTCAGGACCGTTTGAATTTCTTCGTTCGCGATTTAATTGA
AAGCAATCAAAACGGTAAACATCTGGTATTAGGAAAGCGCCCCTCCCAAGGTGATATTGTTTTACAAAGTAACGATTACC
TCAGCCTTGCCAACCATCCATTGATCAAGGCGCGTTTAAAACAGGCCATTGATACCACGCACGACAGTGTGTTTATGTCG
GCTATTTTCTTACAAGATGATGAAACCAAACCTAGCCTAGAGCACCAACTGGCTGAGTTTGTCAATTTCGACTCGTGTCT
GTTGTCTCAGTCGGGTTGGAATGCCAATACGTCGCTACTGCAGACCGTCTGCGCACCGGGCAGCAATGTCTATATCGACT
TCTTTGCGCACATGTCGATGTGGGAAGGTGCGCGTTATGCCAATGCGAACATTCATCCGTTCATGCATAACAATTGTGAC
CATTTGCGCAAACAGATCCAACGTCATGGCCCTGGGCTCATTGTGGTCGATTCCATCTACAGCACCATCGGTACGCTTGC
GCCGCTGACTGAATTGGTTCATATCGCCAAAGAGACTCAGTGCGCCATATTGGTCGATGAATCGCATTCACTCGGCACCC
ATGGCGATAACGGCGCTGGCTTACTGGCGGAATTGGGGCTCTCCGATCAGGTCGATTTTATGACCGCGAGTTTGGCAAAA
ACATTTGCGTATCGTGCGGGGGTTATTTGGGCAAATAACAACGCGAATCAATGTATTCCTTTTGTGGGCTATCCGGCGAT
ATTCAGCTCGACGATATTACCGTATGAAATAGCCGCATTAGAAGCCACATTAGAGGTCATTAAATCGGCCAACGATCGTC
GCAAGAATTTATTTCACAATGCACAACTATTATCACAAGGATTAAATAAAATTGGTATTCACATTCGTAGCCAATCCCAA
ATTATCGCATTGGAAACAGGCGATGAAAAAAATACAGAAAAAGTCCGTGATTATTTAGAAGACAATGGTGTTTTCGGCGC
CGTATTTTGTCGACCGGCCACCTCGAAAACGAAAAATATTATTCGCTTGTCGTTAACCAGTGCCGTCACGGAACAACAGA
TCGACCGCATTTTGTCGGTGTGTCACAGCGCGGTAAAACGGGGGGATATGATCTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.571

97.964

0.672

Multiple sequence alignment