Detailed information NTG0407979

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H0E72_RS17460
• Genome accession: NZ_CP059003
• Coordinates: 3638543..3639535 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2D
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3633543..3644535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0E72_RS17435 (H0E72_17435)	pphB	3634904..3635560 (+)	657	WP_001141352.1	protein-serine/threonine phosphatase	-
H0E72_RS17440 (H0E72_17440)	-	3635602..3635838 (-)	237	WP_000562981.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
H0E72_RS17445 (H0E72_17445)	-	3635849..3637276 (-)	1428	WP_000863217.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
H0E72_RS17450 (H0E72_17450)	-	3637276..3637869 (-)	594	WP_000767728.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
H0E72_RS17455 (H0E72_17455)	-	3638016..3638423 (+)	408	WP_001208071.1	MarR family transcriptional regulator	-
H0E72_RS17460 (H0E72_17460)	rpoS	3638543..3639535 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H0E72_RS17465 (H0E72_17465)	nlpD	3639598..3640692 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H0E72_RS17470 (H0E72_17470)	pcm	3640877..3641503 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H0E72_RS17475 (H0E72_17475)	surE	3641497..3642258 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H0E72_RS17480 (H0E72_17480)	truD	3642239..3643288 (-)	1050	WP_000568936.1	tRNA pseudouridine(13) synthase TruD	-
H0E72_RS17485 (H0E72_17485)	ispF	3643285..3643764 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H0E72_RS17490 (H0E72_17490)	ispD	3643764..3644474 (-)	711	WP_000246153.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=407979 H0E72_RS17460 WP_000081550.1 3638543..3639535(-) (rpoS) [Escherichia coli strain 2D]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=407979 H0E72_RS17460 WP_000081550.1 3638543..3639535(-) (rpoS) [Escherichia coli strain 2D]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715