Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY43_RS19750 Genome accession   NZ_CP046798
Coordinates   937763..939814 (+) Length   683 a.a.
NCBI ID   WP_158108580.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2013V-1001     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 932763..944814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY43_RS19740 - 933436..934578 (+) 1143 WP_143680061.1 exonuclease SbcCD subunit D -
  GPY43_RS19745 - 934582..937623 (+) 3042 WP_158108579.1 SMC family ATPase -
  GPY43_RS19750 cqsS 937763..939814 (+) 2052 WP_158108580.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY43_RS19755 cqsA 939975..941156 (-) 1182 WP_158108581.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY43_RS19760 - 941374..942333 (-) 960 WP_158108582.1 TDT family transporter -
  GPY43_RS19765 clcA 942494..943891 (-) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78684.48 Da        Isoelectric Point: 6.0597

>NTDB_id=407978 GPY43_RS19750 WP_158108580.1 937763..939814(+) (cqsS) [Vibrio furnissii strain 2013V-1001]
MEVVKKIYQYAEPNLTLVGWMGFIGFPFYYYVWAHVFPQPYESLLLRGFCSCLFGGIVFRNAVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLAQAALSVAAAYGAVYWLQHYEPQHVILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQPANPTQGAYIDGQDLTLLHEILGNADE
VIHTGNETIDLLLTSIDENRVSTSTFKRLSAKEVVDHALHSFSYKRALDRQAVTLNAINDFDYFGSETLLKFALYNLLKN
AFYYQNSEHFHIEVTLITRGQENLIIVRDNGVGIAPDRLDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIRCASVLG
EWTEFTLSFPQYHSERVSHIKLDLMKNKSVLYVGTQGLMSRHLSEKAFYQGFRLHHATLSEALTREEYEFEYDIILLDLE
QIGDQWQSLVELEAKLHFTEAKIVYLYDKQRAYPINIERHLRVVPLEIRQLLLDTDKELDQLLFEVDDVAPDHNVVPIKQ
PKYERRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAMEHNEFDLILMDIEMPIIDGIEATRVIRDSNKPYCHI
PIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=407978 GPY43_RS19750 WP_158108580.1 937763..939814(+) (cqsS) [Vibrio furnissii strain 2013V-1001]
ATGGAAGTCGTAAAGAAAATATACCAATATGCTGAACCGAACCTCACGTTAGTGGGGTGGATGGGGTTTATTGGTTTTCC
GTTTTACTACTATGTGTGGGCGCATGTGTTTCCGCAGCCCTATGAATCGCTGCTGCTGCGCGGTTTCTGTTCGTGCCTGT
TTGGCGGCATTGTGTTTCGAAACGCAGTGCCGAAGTTGTGGCAGCGCTACTTACCTTACTATTACCTGTTTATGATCGGC
TTCTGTTTGCCGTTCTTCTTTGCCTACATGATGCTGATGAACGATTGGTCCACGGTGTGGGCGATGTCATTCATGGCGTC
CATCTTCCTACATATTCTGCTGGTTCATGAGACCAAAGTGATGCTGGCGCAAGCTGCGTTATCCGTCGCAGCGGCGTATG
GCGCCGTGTATTGGTTGCAACATTACGAACCACAGCATGTCATTTTGTGGCCTTATGTGCCGATTTTCCTGTTCACATAC
GTGTTCGGGAATCTGTTTTATTTCAGAAACCAAAGCTCGCATGAGTCGAAGGTGTCGATCGCGAAATCCTTTGGCGCCGG
GATTGCACATGAAATGCGTAACCCGCTCAGTGCGTTAAAATCGTCGGTTGATGTGCTGCGTTCGATTTTGCCCGCACAGC
CGGCCAATCCAACCCAAGGTGCATACATCGATGGACAGGATTTGACTTTGCTGCATGAAATTTTGGGCAACGCTGACGAA
GTGATCCACACCGGGAACGAAACCATCGATCTGTTACTGACATCTATCGATGAAAATCGCGTCTCGACCTCAACATTCAA
GCGTTTGTCGGCCAAAGAGGTGGTTGACCATGCCCTGCATTCCTTCTCGTACAAACGTGCGTTGGATCGTCAGGCCGTCA
CGCTCAATGCCATCAACGATTTTGACTATTTCGGCAGTGAAACCCTGCTGAAATTTGCCCTCTACAACTTATTGAAAAAT
GCCTTTTATTATCAGAACAGTGAACATTTTCATATCGAAGTGACGCTCATCACTCGGGGCCAAGAAAACCTCATCATCGT
GCGAGATAACGGCGTGGGCATCGCCCCAGACCGCTTGGATGACATCTTTAAGGACTTCTATACCTTTGGCAAAAATGGCA
GTTATGGTTTGGGTTTGCCGTTTTGTCGCAAGGTGATGAAGTCGTTCGGCGGCAACATCCGTTGTGCCTCCGTGCTGGGG
GAATGGACGGAGTTCACGTTAAGTTTTCCTCAATATCACTCTGAACGCGTCTCGCACATCAAACTGGATTTAATGAAAAA
TAAATCGGTGTTGTATGTTGGTACGCAAGGGCTGATGAGCCGACATCTGAGCGAGAAAGCGTTCTACCAAGGATTTCGCC
TACATCACGCAACGCTGAGTGAGGCGTTAACACGTGAAGAATACGAGTTTGAATACGATATTATTCTGCTGGATTTAGAG
CAGATCGGCGATCAGTGGCAGTCATTGGTTGAGCTGGAAGCCAAGCTGCATTTTACCGAAGCCAAAATTGTTTACCTTTA
CGACAAGCAACGCGCATACCCTATCAATATTGAGCGCCATTTGCGGGTCGTACCTTTAGAAATTCGTCAACTGCTGCTCG
ATACCGACAAAGAACTCGATCAACTGCTGTTTGAGGTGGATGACGTTGCGCCGGATCACAATGTTGTGCCGATCAAACAA
CCAAAATATGAACGCCGTATTCTGGTGGTGGATGACAACCAATCCCTGCGCACATTCACAGCGTTGCTGCTTGAAAAGCA
GGGCTATGAAGTGGTGCAGGCCAATGATGGTCAACAAGCGTTGGATGCAATGGAGCACAACGAGTTCGACCTGATTTTGA
TGGACATTGAAATGCCGATCATTGATGGCATTGAAGCGACGCGTGTGATTCGGGATTCCAACAAGCCGTACTGCCACATT
CCGATTGTTGGCCATACCGGGGATAATAGCCCGCTGACGATTGAGAAAATCCACCAATCTGGCATGAACGATTACATCGT
TAAACCGGCCGATAAAGACAAGCTGCTGGGCAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.064

100

0.592

Multiple sequence alignment