Detailed information NTG0407969

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY43_RS14600
• Genome accession: NZ_CP046797
• Coordinates: 3126169..3127158 (+)
• Length: 329 a.a.
• NCBI ID: WP_158108064.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain 2013V-1001
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3121169..3132158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY43_RS14565	ftsB	3121184..3121468 (+)	285	WP_004723824.1	cell division protein FtsB	-
GPY43_RS14570	ispD	3121465..3122178 (+)	714	WP_158108060.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY43_RS14575	ispF	3122228..3122704 (+)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY43_RS14580	truD	3122736..3123782 (+)	1047	WP_158108061.1	tRNA pseudouridine(13) synthase TruD	-
GPY43_RS14585	surE	3123775..3124542 (+)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
GPY43_RS14590	-	3124535..3125161 (+)	627	WP_158108062.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY43_RS14595	nlpD	3125161..3126096 (+)	936	WP_158108063.1	murein hydrolase activator NlpD	-
GPY43_RS14600	rpoS	3126169..3127158 (+)	990	WP_158108064.1	RNA polymerase sigma factor RpoS	Regulator
GPY43_RS14605	mutS	3127227..3129788 (-)	2562	WP_004723840.1	DNA mismatch repair protein MutS	-
GPY43_RS14610	pncC	3129873..3130367 (+)	495	WP_158108065.1	nicotinamide-nucleotide amidase	-
GPY43_RS14615	recA	3130534..3131586 (+)	1053	WP_004723845.1	recombinase RecA	Machinery gene
GPY43_RS14620	recX	3131681..3132151 (+)	471	WP_004723847.1	recombination regulator RecX	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37764.47 Da
• Isoelectric Point: 4.4719

>NTDB_id=407969 GPY43_RS14600 WP_158108064.1 3126169..3127158(+) (rpoS) [Vibrio furnissii strain 2013V-1001]
MSISNTATKVEEFEFDSEAVNNAATDQELTTHDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=407969 GPY43_RS14600 WP_158108064.1 3126169..3127158(+) (rpoS) [Vibrio furnissii strain 2013V-1001]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCCACGATAATGACCAGTCTGAAGAGGTTCGTGAGGAGTTTGATGCTTCCACGAAAAGCCTTGATGCCA
CTCAGATGTATCTGAGTGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGTATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATTTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGACCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCCCTGATGAACCAGACTCGTACG
ATTCGTTTACCGATTCATGTGGTGAAAGAACTGAACATTTACTTGCGTACTGCGCGTGAGTTGTCTCAGAAACTCGACCA
CGAACCGACCGCGGAAGAAATTGCCGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGTGATGGTGACAAAGCTTTACTCGATATCATCCCTGATATCAACAATTCC
GACCCTGAAGTCTCCACACAGGATGATGACATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAACCCGAAACAGAA
AGAAGTGCTGGCCCGCCGTTTTGGCTTGTTAGGGTATGAACCATCAACACTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGTTTGCGCCGCCTAAGAGAAATCCTGATGAAACAGGGTTTGAACATG
GAATCGCTGTTTAATGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894