Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY38_RS20875 Genome accession   NZ_CP046796
Coordinates   1188717..1189898 (-) Length   393 a.a.
NCBI ID   WP_158141879.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2420-04     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183717..1194898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS20870 cqsS 1186504..1188555 (+) 2052 WP_158141878.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY38_RS20875 cqsA 1188717..1189898 (-) 1182 WP_158141879.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY38_RS20880 - 1190116..1191075 (-) 960 WP_004728184.1 TDT family transporter -
  GPY38_RS20885 clcA 1191236..1192633 (-) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY38_RS20890 - 1193103..1194098 (+) 996 WP_154179871.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43547.52 Da        Isoelectric Point: 7.0246

>NTDB_id=407937 GPY38_RS20875 WP_158141879.1 1188717..1189898(-) (cqsA) [Vibrio furnissii strain 2420-04]
MKSDAKNNRLPDSIQDRLNFFVRDLIESNQNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIKARLKQAIDTTHDSVFMS
AIFLQDDETKPSLEHQLAEFVNFDSCLLSQSGWNANTSLLQTVCAPGSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLRKQIQRHGPGLIVVDSIYSTIGTLAPLTELVHIAKQTQCAILVDESHSLGTHGDKGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNANQCIPFVGYPAIFSSTILPYEIAALEATLEVIKSANDRRKNLFHNAQLLSQGLNKIGIHIRSQSQ
IIALETGDEKNTEKVRDYLEDNGVFGAVFCRPATSKTKNIIRLSLTSAVTEQQIDRILSVCHSAVKRGDMIFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=407937 GPY38_RS20875 WP_158141879.1 1188717..1189898(-) (cqsA) [Vibrio furnissii strain 2420-04]
ATGAAATCTGATGCCAAAAATAATCGGTTACCTGACTCGATTCAGGACCGTTTGAATTTCTTCGTTCGCGATTTAATTGA
AAGCAATCAAAACGGTAAACATCTGGTATTAGGAAAGCGCCCCTCCCAAGGTGATATTGTTTTACAAAGTAACGATTACC
TCAGCCTTGCCAACCATCCATTGATCAAGGCGCGTTTAAAACAGGCCATTGATACCACGCACGACAGTGTGTTTATGTCG
GCCATTTTCTTACAAGATGATGAAACCAAACCTAGCCTAGAGCACCAACTGGCTGAGTTTGTCAATTTCGACTCATGCCT
GTTGTCTCAATCCGGCTGGAATGCCAATACGTCGCTACTGCAGACCGTTTGTGCACCGGGCAGCAATGTCTATATCGACT
TCTTTGCGCACATGTCGATGTGGGAAGGTGCGCGTTATGCCAATGCGAACATTCATCCGTTCATGCATAACAATTGTGAC
CATCTGCGCAAACAGATCCAACGTCATGGCCCTGGGCTCATTGTGGTCGATTCCATCTACAGCACCATTGGTACGCTTGC
GCCACTGACTGAATTGGTTCATATCGCCAAACAGACTCAGTGCGCCATATTGGTCGATGAATCGCATTCACTCGGCACCC
ATGGCGATAAAGGCGCTGGCTTACTGGCGGAATTGGGGCTCTCCGATCAGGTCGATTTTATGACCGCGAGTTTGGCAAAA
ACATTTGCGTATCGTGCGGGGGTTATTTGGGCAAATAACAACGCGAATCAATGTATTCCTTTTGTGGGCTATCCGGCGAT
ATTCAGCTCGACGATATTACCGTATGAAATAGCCGCATTAGAAGCCACATTAGAGGTCATTAAATCGGCCAACGATCGTC
GCAAGAATTTATTTCACAATGCACAACTATTATCACAAGGATTAAATAAAATTGGTATTCACATTCGTAGCCAATCCCAA
ATTATCGCATTGGAAACAGGCGATGAAAAAAATACAGAAAAAGTCCGTGATTATTTAGAAGACAATGGTGTTTTCGGCGC
CGTATTTTGTCGACCGGCCACCTCGAAAACGAAAAATATTATTCGCTTGTCGTTAACCAGTGCCGTCACGGAACAACAGA
TCGACCGCATTTTGTCGGTGTGTCACAGCGCGGTAAAACGGGGGGATATGATCTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.052

97.964

0.667

Multiple sequence alignment