Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY38_RS20870 Genome accession   NZ_CP046796
Coordinates   1186504..1188555 (+) Length   683 a.a.
NCBI ID   WP_158141878.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2420-04     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181504..1193555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS20860 - 1182177..1183319 (+) 1143 WP_143680061.1 exonuclease SbcCD subunit D -
  GPY38_RS20865 - 1183323..1186364 (+) 3042 WP_158141877.1 SMC family ATPase -
  GPY38_RS20870 cqsS 1186504..1188555 (+) 2052 WP_158141878.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY38_RS20875 cqsA 1188717..1189898 (-) 1182 WP_158141879.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY38_RS20880 - 1190116..1191075 (-) 960 WP_004728184.1 TDT family transporter -
  GPY38_RS20885 clcA 1191236..1192633 (-) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78714.50 Da        Isoelectric Point: 6.0597

>NTDB_id=407936 GPY38_RS20870 WP_158141878.1 1186504..1188555(+) (cqsS) [Vibrio furnissii strain 2420-04]
MEVVKKIYQYAEPNLTLVGWMGFIGFPFYYYVWAHVFPQPYESLLLRGFCSCLFGGIVFRNAVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLAQAALSVAAAYGAVYWLQHYEPQHVILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQPANPTQGAYIDGQDLTLLHEILGNADE
VIHTGNETIDLLLTSIDENRVSTSTFKRLSAKEVVDHALHSFSYKRALDRQAVTLNAINDFDYFGSETLLKFALYNLLKN
AFYYQNSEHFHIEVTLITRGQENLIIVRDNGVGIAPDRLDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIRCASVLG
EWTEFTLSFPQYHSERVSHIKLDLMKNKSVLYVGTQGLMSRHLSEKAFYQGFRLHHATLSEALTREEYEFEYDIILLDLE
QIGDQWQSLVELETKLHFTEAKIVYLYDKQRAYPINIERHLRVVPLEIRQLLLDTDKELDQLLFEVDDVAPDHNVVPIKQ
PKYERRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAMEHNEFDLILMDIEMPIIDGIEATRVIRDSNKPYCHI
PIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=407936 GPY38_RS20870 WP_158141878.1 1186504..1188555(+) (cqsS) [Vibrio furnissii strain 2420-04]
ATGGAAGTCGTAAAGAAAATATACCAATATGCTGAACCGAACCTCACGTTAGTGGGGTGGATGGGGTTTATTGGTTTTCC
GTTTTACTACTATGTGTGGGCGCATGTGTTCCCTCAGCCCTATGAATCGCTGCTGCTGCGCGGTTTCTGTTCGTGCCTGT
TTGGCGGCATTGTGTTTCGAAACGCAGTGCCGAAGTTGTGGCAGCGCTACTTACCTTACTATTACCTGTTTATGATCGGC
TTCTGTTTGCCGTTCTTCTTTGCCTATATGATGTTGATGAACGATTGGTCCACGGTGTGGGCGATGTCATTCATGGCATC
CATCTTCCTACATATTCTGCTGGTTCATGAGACCAAAGTGATGCTGGCGCAAGCTGCGTTATCCGTCGCGGCGGCGTATG
GCGCCGTGTATTGGTTGCAACATTACGAACCACAGCATGTCATTTTGTGGCCTTATGTGCCGATTTTCCTGTTCACATAC
GTGTTCGGGAATCTGTTTTATTTCAGAAACCAAAGCTCGCATGAGTCGAAGGTGTCGATCGCGAAATCCTTTGGCGCCGG
GATTGCACATGAAATGCGTAACCCGCTTAGTGCGTTGAAATCGTCGGTTGATGTGCTGCGTTCGATTTTGCCCGCACAGC
CGGCCAATCCAACCCAAGGTGCATACATCGACGGACAGGATCTGACTTTGCTGCATGAAATTTTGGGCAATGCTGACGAA
GTGATCCACACCGGGAACGAAACCATCGACCTGTTACTCACATCTATCGATGAAAACCGCGTCTCGACCTCAACATTCAA
GCGTTTGTCGGCCAAAGAGGTGGTTGACCATGCCCTGCATTCCTTCTCGTACAAACGTGCGCTGGATCGTCAGGCCGTCA
CGCTCAATGCCATCAACGATTTTGACTATTTCGGCAGTGAAACCCTGCTGAAATTTGCCCTCTACAACTTATTGAAAAAT
GCCTTTTATTATCAGAACAGTGAACATTTTCATATCGAAGTGACGCTCATCACTCGGGGCCAAGAAAACCTCATCATCGT
ACGAGATAACGGCGTGGGCATCGCCCCAGACCGCTTGGATGACATCTTTAAGGACTTCTATACCTTTGGTAAAAATGGCA
GCTACGGTTTGGGTTTGCCGTTTTGTCGCAAGGTGATGAAGTCGTTCGGTGGCAATATCCGTTGTGCCTCCGTGCTGGGG
GAATGGACGGAGTTCACGTTAAGTTTTCCTCAATATCACTCTGAACGGGTCTCGCACATCAAACTGGATTTAATGAAAAA
TAAATCGGTGTTGTATGTTGGTACGCAAGGGCTGATGAGCCGACATCTGAGCGAGAAAGCGTTTTACCAAGGATTTCGCC
TACATCACGCAACGCTGAGCGAGGCGTTAACACGTGAAGAATACGAGTTTGAATACGACATTATTCTGCTGGATTTAGAG
CAGATCGGCGATCAGTGGCAGTCATTGGTCGAGCTGGAAACCAAGCTGCATTTTACCGAAGCCAAAATTGTTTACCTTTA
CGACAAGCAACGCGCATACCCCATCAATATTGAGCGCCATTTGCGGGTCGTACCTTTAGAAATTCGTCAACTGCTGCTCG
ATACCGACAAAGAACTCGATCAACTGCTGTTTGAGGTGGATGACGTTGCGCCGGATCACAATGTTGTGCCGATCAAACAA
CCGAAATATGAACGCCGTATTCTGGTGGTGGATGACAACCAATCCCTGCGCACATTCACGGCGTTGCTGCTTGAAAAGCA
GGGCTATGAAGTGGTGCAGGCCAATGATGGTCAACAGGCGTTGGATGCAATGGAGCACAACGAGTTCGACCTGATTTTGA
TGGACATTGAAATGCCGATCATTGATGGCATTGAAGCGACGCGCGTGATTCGGGATTCCAATAAGCCGTACTGCCATATT
CCGATTGTTGGCCATACCGGGGATAACAGCCCGCTGACAATTGAGAAAATCCACCAATCTGGCATGAACGATTACATCGT
TAAACCGGCCGATAAAGACAAGCTGCTGGGCAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.064

100

0.592

Multiple sequence alignment