Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   HZZ00_RS34525 Genome accession   NZ_CP058977
Coordinates   7861219..7862628 (+) Length   469 a.a.
NCBI ID   WP_180329984.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-sy36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7856219..7867628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZZ00_RS34505 (HZZ00_34505) - 7856285..7857097 (-) 813 WP_180329982.1 sugar phosphate isomerase/epimerase -
  HZZ00_RS34510 (HZZ00_34510) - 7857177..7858109 (-) 933 WP_180329983.1 Ppx/GppA phosphatase family protein -
  HZZ00_RS34515 (HZZ00_34515) - 7858181..7859020 (+) 840 WP_070022501.1 hypothetical protein -
  HZZ00_RS34520 (HZZ00_34520) - 7859251..7861017 (-) 1767 WP_257585522.1 hypothetical protein -
  HZZ00_RS34525 (HZZ00_34525) radA/sms 7861219..7862628 (+) 1410 WP_180329984.1 DNA repair protein RadA Machinery gene
  HZZ00_RS34530 (HZZ00_34530) disA 7862709..7863833 (+) 1125 WP_180329985.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  HZZ00_RS34535 (HZZ00_34535) - 7863888..7864712 (-) 825 WP_180329986.1 hypothetical protein -
  HZZ00_RS34540 (HZZ00_34540) - 7864892..7865767 (+) 876 WP_180329987.1 A/G-specific adenine glycosylase -
  HZZ00_RS34545 (HZZ00_34545) - 7866055..7866594 (+) 540 WP_070022497.1 SigE family RNA polymerase sigma factor -
  HZZ00_RS34550 (HZZ00_34550) - 7866582..7867241 (+) 660 WP_257585523.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49820.05 Da        Isoelectric Point: 7.7529

>NTDB_id=407919 HZZ00_RS34525 WP_180329984.1 7861219..7862628(+) (radA/sms) [Streptomyces sp. NEAU-sy36]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVVNSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYVTGEESASQVRLRADRIGALHDHLYLAAETDLSAVL
GHLDEVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPPGMKVLEVADMGDALRVLPRSRRREAPREAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=407919 HZZ00_RS34525 WP_180329984.1 7861219..7862628(+) (radA/sms) [Streptomyces sp. NEAU-sy36]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGCACCACGGCGCCCGGCC
GGGTCGTGAACTCCGCGCTGCCCATCGGCCAGGTCGACGGCAGGCAGGCCACCGCCCGCCCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTGGTGCCGGGCGCGGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTCGCGGCCAAGGCGGCGAGCGAGGAGCACCGCACCCTCTATGTCACGGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCGGCGCCCTGCACGACCATCTGTATCTGGCCGCGGAGACCGACCTGTCCGCGGTCCTC
GGTCACTTGGACGAGGTCAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACCGTCGCCTCCCCGGAGATCGAGGGGGC
GCCCGGCGGCATGGCCCAGGTGCGCGAGGTGGCCGGGGCGCTGATCCGCGCGTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTGGGCCACGTCACCAAGGACGGCGCCATCGCGGGCCCCCGCCTCCTGGAGCACCTGGTGGACGTCGTGCTGCACTTC
GAGGGCGACCGGCACGCCCGGCTGCGCCTGGTGCGCGGTGTGAAGAACCGGTACGGCGCCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGCCTCTTCCTCACCCGGCGCGACGAACCGGTGCCGG
GCACCTGTCTGACCGTGACCCTGGAGGGCCGCCGCCCGCTGGTCGCGGAGGTGCAGGCGCTGACCGTCGACTCCCAGATC
CCCTCCCCCAGGCGCACGACGTCCGGCCTGGAGACCTCCCGGGTGTCGATGATGCTGGCCGTGCTCGAACAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGGGTGAAGCTGTCCGAGCCGGCCGCCGACCTGG
CGATCGCCCTCGCGCTGGCCTCCGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTCGCCATCGGCGAGGTGGGCCTG
GCGGGCGAGGTGAGGCGGGTCACGGGCGTGCAGCGCAGACTCGCCGAGGCGCACCGGCTGGGCTTCACGCATGCCCTGGT
GCCGGGCGATCCGGGGAAGATCCCGCCGGGGATGAAGGTGCTGGAAGTCGCCGACATGGGAGATGCGCTGCGGGTCCTGC
CCCGCTCCCGTCGCCGAGAGGCCCCACGGGAGGCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.027

96.375

0.424
  radA Streptococcus mitis SK321

42.539

95.736

0.407
  radA Streptococcus mitis NCTC 12261

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.094

95.736

0.403
  radA Streptococcus pneumoniae D39

42.094

95.736

0.403
  radA Streptococcus pneumoniae Rx1

42.094

95.736

0.403
  radA Streptococcus pneumoniae R6

42.094

95.736

0.403

Multiple sequence alignment