Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPY38_RS08800 Genome accession   NZ_CP046795
Coordinates   1909949..1911316 (-) Length   455 a.a.
NCBI ID   WP_158141434.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2420-04     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1904949..1916316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS08765 moaE 1905655..1906110 (-) 456 WP_014205521.1 molybdopterin synthase catalytic subunit MoaE -
  GPY38_RS08770 moaD 1906112..1906357 (-) 246 WP_004726637.1 molybdopterin synthase sulfur carrier subunit -
  GPY38_RS08775 moaC 1906354..1906833 (-) 480 WP_158140979.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPY38_RS08780 moaB 1906843..1907355 (-) 513 WP_004726639.1 molybdenum cofactor biosynthesis protein B -
  GPY38_RS08785 moaA 1907426..1908415 (-) 990 WP_199244808.1 GTP 3',8-cyclase MoaA -
  GPY38_RS08790 - 1908725..1909615 (+) 891 WP_004726641.1 YvcK family protein -
  GPY38_RS08795 luxU 1909604..1909942 (-) 339 WP_004726642.1 quorum-sensing phosphorelay protein LuxU -
  GPY38_RS08800 luxO 1909949..1911316 (-) 1368 WP_158141434.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPY38_RS08805 uvrB 1911603..1913633 (-) 2031 WP_158140981.1 excinuclease ABC subunit UvrB -
  GPY38_RS08815 - 1914474..1915703 (+) 1230 WP_055466262.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50616.90 Da        Isoelectric Point: 5.7355

>NTDB_id=407907 GPY38_RS08800 WP_158141434.1 1909949..1911316(-) (luxO) [Vibrio furnissii strain 2420-04]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKANKLKNETDNPGNQNYQGFIGSSQTMLAVYRTIDSAATSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPDVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREIALTMLPPPLNQLSDSRINVPKASPAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEKEK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=407907 GPY38_RS08800 WP_158141434.1 1909949..1911316(-) (luxO) [Vibrio furnissii strain 2420-04]
ATGGTCGAAGACACGGCGTCGGTTGCGGCGTTGTATCGTTCGTACCTGACACCGCTCGAGATCGATATCAACATTGTCGG
AACGGGACGTGAAGCGATCGAGAGTATCGCCCATCGCGAGCCGGATCTGATCCTCCTCGATCTGCGCCTGCCAGACATGA
CGGGTATGGACGTCTTGCACGCGGTGAAACAGCGTTCACCGGATGTGCCGGTGATTTTTATGACGGCTCACGGCTCTATT
GATACCGCCGTCGAAGCTATGCGCCACGGCGCGCAAGATTTCCTCATCAAACCGTGCGAAGCCGACCGTTTGCGTGTGAC
GGTCAACAACGCCATTCGCAAGGCAAACAAACTCAAAAACGAGACCGACAATCCAGGTAATCAGAATTACCAAGGGTTCA
TTGGCAGCAGCCAGACCATGTTGGCGGTGTATCGCACTATCGACTCTGCGGCCACCAGTAAAGCGAGTATTTTCATTACC
GGCGAAAGTGGTACCGGCAAAGAGGTGTGCGCCGAAGCCATCCATGCGGCCAGCAAGCGCGGCGACAAGCCGTTCATTGC
CATTAACTGTGCGGCCATTCCCAAAGATCTGATTGAAAGTGAGCTGTTTGGTCACGTCAAAGGCGCGTTTACTGGCGCGG
CGACGGATCGTCAGGGCGCGGCAGAACTGGCCGATGGTGGCACCTTGTTCTTGGACGAGCTGTGTGAAATGGATTTGGAT
CTGCAAACCAAGCTGCTGCGCTTTATTCAGACCGGGACCTTCCAGAAAGTCGGATCGTCTAAAATGAAGAGTGTGGACGT
GCGTTTTGTGTGTGCGACCAACCGTGACCCTTGGAAAGAAGTGCAAGAAGGGCGTTTTCGTGAAGACTTGTATTACCGTC
TGTACGTGATTCCGTTGCATTTGCCCCCTTTGCGTGAGCGCGGCGATGATGTGATTGAAATCGCGTATTCACTACTAGGG
TACATGTCGAAAGAAGAAGGTAAAGGCTTTGTACGTTTGGCGCCAGATGTCGTGGAGCGCTTCAAACAGTACGAATGGCC
GGGGAACGTGCGCCAGCTGCAGAACGTGCTGCGCAACGTGGTGGTGCTTAATGAAGGGCGTGAAATTGCGCTGACAATGC
TGCCGCCACCGCTGAACCAATTGAGTGACTCACGCATCAATGTCCCGAAAGCCAGCCCGGCACCGGTGTCGGTGCATGAA
ATTTTCCCGTTATGGATGACAGAAAAGCAGGCGATCGAAAAAGCAATCGAGGCCTGTGATGGCAATATTCCGCGTGCTGC
GGGCTATTTGGATGTCAGTCCATCTACCATCTACCGCAAGCTGCAAACCTGGAATGAAAAGGTGCAGGAAAAGGAAAAGG
AAAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

90.828

98.242

0.892

Multiple sequence alignment