Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY38_RS00695 Genome accession   NZ_CP046795
Coordinates   146501..147118 (-) Length   205 a.a.
NCBI ID   WP_158140203.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2420-04     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 141501..152118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS00685 aceF 142802..144682 (+) 1881 WP_158140201.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPY38_RS00690 lpdA 144955..146382 (+) 1428 WP_004729062.1 dihydrolipoyl dehydrogenase -
  GPY38_RS00695 opaR 146501..147118 (-) 618 WP_158140203.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GPY38_RS00700 hpt 147439..147966 (+) 528 WP_004729056.1 hypoxanthine phosphoribosyltransferase -
  GPY38_RS00705 can 148015..148683 (-) 669 WP_004729053.1 carbonate dehydratase -
  GPY38_RS00710 - 149026..149943 (+) 918 WP_143680351.1 ABC transporter ATP-binding protein -
  GPY38_RS00715 - 149949..150719 (+) 771 WP_004729049.1 ABC transporter permease -
  GPY38_RS00720 panC 150794..151675 (-) 882 WP_004729048.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23841.25 Da        Isoelectric Point: 6.7459

>NTDB_id=407897 GPY38_RS00695 WP_158140203.1 146501..147118(-) (opaR) [Vibrio furnissii strain 2420-04]
MGASIEKRPRTRLSPQKRKLQLMEIALEVFANRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDMHAKDNIANITREMVRLANDDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLLKNMFSKAIERGEVCEQHDA
YDLATLFHGVCYSLFVQANRVRDEGYMQKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=407897 GPY38_RS00695 WP_158140203.1 146501..147118(-) (opaR) [Vibrio furnissii strain 2420-04]
ATGGGCGCATCGATAGAGAAACGCCCTAGAACGCGGCTATCTCCCCAAAAACGTAAACTTCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAATCGTGGGATTGGTCGTGGCGGTCACGCCGACATCGCAGAAATTGCTCAAGTTTCTGTCGCGACCG
TATTCAACTATTTCCCAACGCGCGAAGATTTGGTCGACGACGTGCTCACTTACGTGGTTCGTCAGTTCTCCAACTTCCTG
ACCGACAACATCGATCTGGACATGCACGCAAAAGACAACATTGCGAACATCACCCGCGAAATGGTTCGTCTGGCCAATGA
CGATTGCCACTGGCTGAAAGTGTGGTTTGAGTGGAGCGCATCCACCCGTGATGAAGTGTGGCCCCTGTTTGTGTCGAGCA
ACCGCACCAACCAACTGCTGCTGAAAAACATGTTCTCAAAAGCGATTGAACGGGGTGAAGTATGCGAGCAACACGATGCA
TATGATCTGGCGACGCTGTTCCATGGCGTGTGCTACTCCCTGTTCGTGCAAGCAAACCGTGTACGCGATGAAGGCTACAT
GCAGAAGCTGGTGAAGAGCTACCTCGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.198

98.537

0.79
  hapR Vibrio cholerae C6706

76.733

98.537

0.756
  hapR Vibrio cholerae strain A1552

76.733

98.537

0.756

Multiple sequence alignment