Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPX86_RS13295 Genome accession   NZ_CP046794
Coordinates   33190..34371 (-) Length   393 a.a.
NCBI ID   WP_004396503.1    Uniprot ID   A0A9X0R873
Organism   Vibrio metschnikovii strain 9502-00     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 28190..39371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS13290 cqsS 30960..33008 (+) 2049 WP_154171116.1 response regulator Regulator
  GPX86_RS13295 cqsA 33190..34371 (-) 1182 WP_004396503.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPX86_RS13300 elbB 34962..35612 (-) 651 WP_158145039.1 isoprenoid biosynthesis glyoxalase ElbB -
  GPX86_RS13305 yjjG 35707..36381 (+) 675 WP_158145463.1 pyrimidine 5'-nucleotidase -
  GPX86_RS13310 rnk 36435..36845 (-) 411 WP_004396497.1 nucleoside diphosphate kinase regulator -
  GPX86_RS13315 phnR 37086..37805 (+) 720 WP_158145040.1 phosphonate utilization transcriptional regulator PhnR -
  GPX86_RS13320 - 37894..38682 (-) 789 WP_004396493.1 siderophore-interacting protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43622.68 Da        Isoelectric Point: 6.8456

>NTDB_id=407889 GPX86_RS13295 WP_004396503.1 33190..34371(-) (cqsA) [Vibrio metschnikovii strain 9502-00]
MKYGTSKKQLPEFIQQRLDLFINDLIDSNNNGKHLVLGKRPSTNDIILQSNDYLSLSHHPLIKAHLKQAIDDSTDSVFMS
AIFLQDEADKPDLEQQLAQFAQFDTCLLSQSGWNANTALLQTICSADTNVYIDFFAHMSLWEGARYANAHLHPFMHNHCD
HLVKLIKRHGPGLIVVDSIYSTIGTVAPLADLVAIAKQYGCAILVDESHSLGTHGPKGAGLLAELGLSSQVDFMTVSLAK
SFAYRAGAIWANNHVDRCLPFVGYPAIFSSTILPYEVAALSATLSVIQSADERRKQLFRHSEQLRHGLLELGFTIRSQSQ
IIALETGDERNTENVRDFLENNGVFGAVFCRPATAKNKNIIRLSLNSSLKDSDIQKILSVCESAIHNKQLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=407889 GPX86_RS13295 WP_004396503.1 33190..34371(-) (cqsA) [Vibrio metschnikovii strain 9502-00]
ATGAAATATGGCACCTCAAAAAAACAACTACCTGAATTTATTCAACAACGATTAGATTTATTTATTAACGACCTTATTGA
TAGTAATAATAATGGCAAACATTTGGTTCTAGGCAAGCGTCCGAGCACTAATGATATTATTTTACAGAGTAATGATTACC
TTAGTTTATCTCATCATCCGCTCATTAAGGCTCACTTAAAACAAGCCATCGATGATAGTACCGATAGTGTGTTTATGTCG
GCGATCTTTTTACAAGATGAGGCTGACAAACCTGATCTTGAGCAACAGCTTGCCCAATTTGCTCAATTTGATACGTGTCT
ACTTTCGCAGTCTGGTTGGAATGCGAATACCGCACTATTACAAACGATCTGCTCAGCCGATACCAACGTCTATATCGACT
TTTTTGCTCATATGTCACTTTGGGAGGGAGCTCGCTATGCCAATGCTCATCTGCACCCTTTTATGCATAATCACTGTGAT
CATTTAGTGAAGCTCATTAAACGTCATGGACCCGGATTGATCGTGGTCGATTCTATCTATAGTACAATTGGTACTGTCGC
CCCATTAGCAGATTTAGTTGCGATAGCTAAACAATATGGTTGCGCTATTTTAGTTGATGAGTCCCATTCACTCGGAACTC
ATGGTCCTAAAGGTGCCGGTTTGCTCGCTGAACTTGGTTTATCATCACAGGTTGATTTTATGACGGTAAGTTTAGCGAAA
AGCTTTGCTTATCGAGCTGGCGCTATCTGGGCGAATAACCATGTTGATCGCTGTTTACCTTTTGTCGGTTATCCCGCGAT
CTTTAGCTCGACAATTCTACCTTATGAAGTCGCAGCGCTCAGTGCTACGTTATCGGTAATCCAATCGGCGGATGAAAGAA
GAAAACAACTTTTTCGTCACAGTGAGCAGTTACGTCATGGCTTACTTGAACTTGGTTTTACTATTCGTAGTCAATCGCAA
ATTATTGCTTTAGAAACAGGCGATGAACGTAATACCGAAAATGTTCGTGATTTTCTAGAGAATAATGGCGTATTTGGCGC
AGTCTTTTGTCGCCCTGCCACGGCAAAAAATAAAAACATTATTCGATTATCGTTAAATAGCTCACTAAAAGACTCTGACA
TTCAAAAAATTCTCTCAGTCTGTGAGTCTGCGATACACAATAAGCAACTCTATTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.814

98.728

0.679

Multiple sequence alignment