Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPX86_RS13290 Genome accession   NZ_CP046794
Coordinates   30960..33008 (+) Length   682 a.a.
NCBI ID   WP_154171116.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 9502-00     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 25960..38008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS13280 - 26716..27858 (+) 1143 WP_158145037.1 exonuclease SbcCD subunit D -
  GPX86_RS13285 - 27862..30906 (+) 3045 WP_158145038.1 SMC family ATPase -
  GPX86_RS13290 cqsS 30960..33008 (+) 2049 WP_154171116.1 response regulator Regulator
  GPX86_RS13295 cqsA 33190..34371 (-) 1182 WP_004396503.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPX86_RS13300 elbB 34962..35612 (-) 651 WP_158145039.1 isoprenoid biosynthesis glyoxalase ElbB -
  GPX86_RS13305 yjjG 35707..36381 (+) 675 WP_158145463.1 pyrimidine 5'-nucleotidase -
  GPX86_RS13310 rnk 36435..36845 (-) 411 WP_004396497.1 nucleoside diphosphate kinase regulator -
  GPX86_RS13315 phnR 37086..37805 (+) 720 WP_158145040.1 phosphonate utilization transcriptional regulator PhnR -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78646.38 Da        Isoelectric Point: 5.7691

>NTDB_id=407888 GPX86_RS13290 WP_154171116.1 30960..33008(+) (cqsS) [Vibrio metschnikovii strain 9502-00]
MDAVKKIYQYAEPNLTLVGWMGFIGFPIYYYVWTYLFPQGYESFWLRGFCSLLFAGIAFRHSFPKALQRYLPYYYLLSIG
FCLPFFFSFMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLPQAIISVLLAYFSVYVVVDAAPSQMISWTYVPIFIFTY
VFGNLFYFRNQVSHESKASLAKSFGAGIAHEMRNPLSALKSSLDVVRTLVPSPHSGQATHIINQQDLQQLHEILNDADEV
IHSGNETIDLLLTSIDQHRVSTSTFRKLSAATVVENAIHSFAYKRAVDRAAVSLTVNQDFDFFGSDTLLKFALYNLLKNA
FYYQSSEVFTINIELNRVDEQNVITVKDNGIGIEAEQLEEIFKDFYTFGKHNSYGLGLPFCRKVMHSFGGEIICHSVFGE
WTQFTLQFPDVESERIKQIKHDLLKSKSILLIGEPSLLSRHLNEQAFYLGFTLHMLTLSQAMQKEAYEFEFDLIFIDLAP
FETQWDKLSLLEGQLHFTEARISYIYDQSKRYPINISRYLTIYPIEIRHLLKDSIGTIEKLLFSIDELEVERGNIPQREV
NYQRSILLVDDNDSLRTFSAILLEKQGYDVYQAHDGQQALEILKQHTMDLILMDVEMPVIDGLQATNIIRSSMAEYRKTP
IIGYTGDNSSETINRLYRAGMNDYIVKPADKDKLLNKVADWL

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=407888 GPX86_RS13290 WP_154171116.1 30960..33008(+) (cqsS) [Vibrio metschnikovii strain 9502-00]
ATGGATGCGGTAAAAAAAATATACCAATACGCAGAACCAAACTTAACGTTAGTTGGATGGATGGGCTTCATCGGTTTTCC
GATTTACTATTATGTATGGACTTACCTGTTTCCCCAAGGCTATGAATCGTTTTGGCTACGGGGATTTTGCTCGCTATTGT
TTGCCGGAATTGCTTTTCGCCACTCATTTCCCAAAGCATTACAGCGCTATTTACCGTATTACTATCTGCTTTCAATAGGC
TTTTGTTTGCCTTTTTTCTTCTCTTTTATGATGTTGATGAACGATTGGTCGACAGTCTGGGCGATGTCTTTTATGGCATC
GATTTTCTTGCATATTCTGCTAGTTCATGAAACTAAGGTGATGTTGCCACAAGCGATTATTTCCGTATTACTCGCTTACT
TCTCGGTTTATGTTGTCGTTGATGCCGCCCCTAGTCAGATGATTTCTTGGACTTATGTACCTATTTTTATCTTTACTTAT
GTATTCGGTAATCTGTTCTACTTTCGCAATCAGGTATCACACGAGAGCAAAGCATCATTAGCAAAATCGTTTGGTGCAGG
AATTGCACACGAAATGCGTAATCCACTCAGTGCGCTTAAGTCTTCTCTTGATGTGGTGCGTACTCTAGTTCCTTCCCCCC
ATTCAGGCCAAGCAACTCATATTATTAATCAACAAGATTTACAGCAATTGCATGAAATATTAAATGATGCGGATGAGGTG
ATTCATTCTGGTAATGAAACCATAGATTTATTGTTAACGTCAATTGATCAGCATCGTGTCTCAACGTCGACCTTTCGAAA
ATTATCCGCTGCTACGGTGGTTGAAAATGCTATTCATTCTTTTGCCTACAAACGGGCCGTCGATCGAGCAGCCGTTTCAT
TAACCGTTAATCAAGATTTTGATTTTTTTGGTAGCGATACCTTACTTAAGTTTGCGTTGTACAATTTACTGAAAAATGCT
TTTTATTATCAAAGTAGTGAAGTGTTTACGATTAACATCGAATTGAATCGAGTCGATGAGCAGAATGTGATTACTGTCAA
AGATAATGGGATTGGTATTGAAGCAGAACAGCTCGAAGAAATTTTTAAGGACTTCTATACCTTTGGTAAACATAATAGTT
ATGGGTTAGGGCTGCCTTTTTGTCGAAAAGTTATGCATTCATTTGGCGGTGAAATTATTTGCCATTCCGTCTTCGGTGAA
TGGACCCAATTTACCCTTCAGTTTCCAGATGTTGAATCCGAACGTATCAAACAGATAAAACACGATCTACTAAAATCTAA
ATCGATTTTATTGATTGGTGAACCGAGTTTATTAAGTCGGCATCTGAATGAACAAGCTTTTTATTTAGGGTTTACTTTGC
ATATGCTCACTCTCAGTCAAGCGATGCAAAAAGAAGCGTATGAATTTGAATTTGATCTTATTTTTATTGATTTAGCTCCA
TTTGAAACACAGTGGGATAAATTGAGCTTACTGGAAGGTCAATTACATTTTACTGAAGCCAGAATTAGTTATATTTATGA
CCAATCTAAGCGTTATCCTATTAATATCTCTCGTTACTTAACAATTTATCCAATTGAAATACGTCATTTGTTAAAAGACA
GTATTGGAACCATCGAGAAGCTATTATTTTCGATTGATGAGCTTGAGGTTGAAAGGGGAAATATACCACAACGAGAAGTC
AATTATCAAAGAAGTATCTTATTAGTCGATGACAATGATTCTTTACGAACGTTTTCTGCTATATTATTAGAAAAGCAGGG
TTATGATGTTTATCAAGCTCATGATGGTCAACAAGCTTTAGAGATATTAAAACAACATACTATGGATTTAATCTTAATGG
ATGTTGAAATGCCGGTTATTGATGGATTACAGGCGACGAATATCATCCGAAGTTCAATGGCCGAATACCGAAAAACGCCT
ATTATTGGCTATACAGGGGATAATAGCTCAGAAACGATAAATCGTCTCTACCGTGCTGGAATGAATGATTATATTGTTAA
ACCTGCTGATAAAGATAAATTATTAAATAAAGTGGCCGATTGGTTATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

57.101

100

0.572

Multiple sequence alignment