Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPX86_RS10550 Genome accession   NZ_CP046793
Coordinates   2344050..2344679 (-) Length   209 a.a.
NCBI ID   WP_110167828.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 9502-00     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2339050..2349679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS10540 aceF 2340365..2342251 (+) 1887 WP_158144694.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPX86_RS10545 lpdA 2342518..2343945 (+) 1428 WP_004394244.1 dihydrolipoyl dehydrogenase -
  GPX86_RS10550 opaR 2344050..2344679 (-) 630 WP_110167828.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GPX86_RS10555 - 2344771..2344917 (+) 147 WP_158144695.1 hypothetical protein -
  GPX86_RS10560 hpt 2345066..2345596 (+) 531 WP_004394241.1 hypoxanthine phosphoribosyltransferase -
  GPX86_RS10565 can 2345674..2346342 (-) 669 WP_004394240.1 carbonate dehydratase -
  GPX86_RS10570 - 2346606..2347529 (+) 924 WP_154170172.1 ABC transporter ATP-binding protein -
  GPX86_RS10575 - 2347529..2348299 (+) 771 WP_004394238.1 ABC transporter permease -
  GPX86_RS10580 panC 2348426..2349307 (-) 882 WP_154170174.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23977.41 Da        Isoelectric Point: 6.6008

>NTDB_id=407886 GPX86_RS10550 WP_110167828.1 2344050..2344679(-) (opaR) [Vibrio metschnikovii strain 9502-00]
MDASIEKRPRTRLSPQKRKQQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVREFSNFL
TDHIDLDLHAKQNMHNIASGMVSLAIDDCHWLKVWFEWSASTRDEVWPLFMSSNRTNQLLVKNVFSKAIERSEVCSKHNP
EDLATLFHGICYSLFVQANRARDEADMQKLVNNYLNMLCIYQGDRAVAI

Nucleotide


Download         Length: 630 bp        

>NTDB_id=407886 GPX86_RS10550 WP_110167828.1 2344050..2344679(-) (opaR) [Vibrio metschnikovii strain 9502-00]
ATGGACGCATCTATTGAGAAACGCCCTAGAACAAGGCTATCTCCACAAAAACGTAAACAGCAACTCATGGAAATCGCGCT
AGAAGTCTTCGCGAAACGAGGTATTGGTCGTGGCGGCCATGCTGACATTGCTGAGATTGCTCAGGTCTCAGTAGCCACGG
TATTCAATTACTTCCCGACCCGTGAAGATCTCGTCGATGACGTTCTCACTTTTGTGGTGCGTGAGTTCTCTAATTTCTTA
ACTGACCATATCGATCTCGATTTGCATGCAAAGCAAAATATGCACAATATCGCGTCGGGTATGGTGAGTTTGGCTATCGA
CGATTGTCACTGGTTAAAAGTGTGGTTTGAGTGGAGCGCCTCTACGCGTGATGAAGTATGGCCACTCTTTATGTCGAGTA
ATCGTACCAATCAACTGCTAGTGAAAAATGTCTTTTCAAAAGCGATTGAGCGCTCAGAGGTATGTAGCAAACATAACCCT
GAAGATCTTGCTACCCTGTTTCACGGCATCTGCTACTCGCTGTTCGTTCAAGCCAATCGAGCGCGTGATGAGGCCGATAT
GCAGAAACTGGTTAATAACTATTTAAATATGCTCTGTATCTATCAAGGCGATCGCGCAGTAGCTATCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

77.778

94.737

0.737
  hapR Vibrio cholerae C6706

75.743

96.651

0.732
  hapR Vibrio cholerae strain A1552

75.743

96.651

0.732

Multiple sequence alignment