Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HZZ00_RS01105 Genome accession   NZ_CP058977
Coordinates   243058..243657 (+) Length   199 a.a.
NCBI ID   WP_180330453.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-sy36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 238058..248657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZZ00_RS01090 (HZZ00_01090) - 239935..241464 (+) 1530 WP_180330451.1 substrate-binding domain-containing protein -
  HZZ00_RS01095 (HZZ00_01095) - 241676..242425 (-) 750 WP_180330452.1 SLATT domain-containing protein -
  HZZ00_RS01100 (HZZ00_01100) - 242662..243006 (+) 345 WP_070024151.1 YbaB/EbfC family nucleoid-associated protein -
  HZZ00_RS01105 (HZZ00_01105) recR 243058..243657 (+) 600 WP_180330453.1 recombination mediator RecR Machinery gene
  HZZ00_RS01110 (HZZ00_01110) - 243650..244312 (+) 663 WP_180330454.1 DUF5063 domain-containing protein -
  HZZ00_RS01115 (HZZ00_01115) - 244507..245778 (+) 1272 WP_180330455.1 aspartate kinase -
  HZZ00_RS01120 (HZZ00_01120) - 245775..246830 (+) 1056 WP_180330456.1 aspartate-semialdehyde dehydrogenase -
  HZZ00_RS01125 (HZZ00_01125) - 247158..247844 (+) 687 WP_180330457.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21722.04 Da        Isoelectric Point: 4.9909

>NTDB_id=407858 HZZ00_RS01105 WP_180330453.1 243058..243657(+) (recR) [Streptomyces sp. NEAU-sy36]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVKRLAQALLEVKAKVRFCATCGNVAQEELCNICRDPRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSVTELILATDPNLEGEATATYLARMIK
SMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=407858 HZZ00_RS01105 WP_180330453.1 243058..243657(+) (recR) [Streptomyces sp. NEAU-sy36]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTGCTTCAGGCCGAGCCGACGGACGTGAAGCGGCTCGCGCAGGCGCTCCTGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACGTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGTGACCCGCGCCGCGACCCCTCCGTG
ATCTGCGTCGTGGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGCACCCGCGAGTTCCGCGGCCGCTACCACGTGCTCGG
CGGCGCCATCAGCCCGATCGAGGGCGTGGGACCCGACGACCTGCGTATACGGGAACTTCTCGCGCGGTTGGCCGACGGGT
CGGTCACGGAGTTGATCCTGGCCACCGATCCGAATCTCGAAGGCGAGGCGACGGCCACGTACCTCGCCCGCATGATCAAG
TCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGAAGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457