Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HZZ00_RS00020 Genome accession   NZ_CP058977
Coordinates   5231..6352 (+) Length   373 a.a.
NCBI ID   WP_180330366.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-sy36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231..11352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZZ00_RS00010 (HZZ00_00010) dnaN 2979..4109 (+) 1131 WP_070028856.1 DNA polymerase III subunit beta -
  HZZ00_RS00015 (HZZ00_00015) gnd 4322..5200 (+) 879 WP_180330367.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  HZZ00_RS00020 (HZZ00_00020) recF 5231..6352 (+) 1122 WP_180330366.1 DNA replication/repair protein RecF Machinery gene
  HZZ00_RS00025 (HZZ00_00025) - 6349..6885 (+) 537 WP_180330365.1 DUF721 domain-containing protein -
  HZZ00_RS00030 (HZZ00_00030) gyrB 7271..9343 (+) 2073 WP_180330364.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40747.44 Da        Isoelectric Point: 7.6396

>NTDB_id=407854 HZZ00_RS00020 WP_180330366.1 5231..6352(+) (recF) [Streptomyces sp. NEAU-sy36]
MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVATDAPLVRMGAERAVIRAQVRQGDRQ
QLIELELNPGRANRARINRSPQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARAGAELLAQRLDLIGALRPLADKAYEQLAPGGGPLALEYKPSAPGEAH
TREDLYAQLLAALAEARRQEIERGVTLVGPHRDDLLLKLGELPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVLD
DVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPHVLTGARYAVSGGTVERV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=407854 HZZ00_RS00020 WP_180330366.1 5231..6352(+) (recF) [Streptomyces sp. NEAU-sy36]
ATGCACGTCACGCATCTTTCGCTCGCCGACTTCCGCTCGTACGCCCGGGCCGAGGTGCCGCTCGACCCGGGCGTCACCGC
CTTCGTCGGGCCCAACGGGCAGGGCAAGACCAACCTGGTCGAGGCGGTCGGCTATCTGGCGACGCTCGGCAGCCACCGCG
TCGCGACGGACGCGCCGCTGGTGCGGATGGGCGCCGAGCGGGCCGTGATCCGGGCGCAGGTCCGGCAGGGCGACCGGCAG
CAGCTGATCGAGCTGGAGTTGAACCCGGGCCGGGCCAACCGCGCCCGCATCAACCGGTCGCCGCAGGTCAGACCCCGTGA
CGTGCTGGGCATCGTACGGACCGTGCTGTTCGCGCCCGAGGACCTCGCCCTGGTGAAGGGTGATCCCGGCGAGCGGCGCA
GGTTCCTCGACGAGCTGATCACCGCGCGCTCGCCGCGGATGGCGGGCGTGCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACGCTCCTGAAGTCCGCCGCGCTGGCCCGGCGGCACGGCGGGCGCTCCATGGACCTGTCCACGCTGGACGTGTG
GGACCAGCACCTGGCGCGCGCCGGTGCCGAACTGCTCGCCCAGCGGCTCGACCTGATCGGCGCGCTGCGGCCGCTGGCCG
ACAAGGCCTATGAGCAGCTGGCCCCCGGCGGCGGTCCGCTCGCGCTGGAGTACAAGCCGTCCGCGCCCGGCGAGGCGCAC
ACCCGCGAGGATCTGTACGCGCAGCTGCTGGCCGCCCTGGCCGAGGCGCGCAGACAGGAGATCGAGCGGGGCGTCACCCT
GGTCGGCCCGCACCGCGACGACCTGCTCCTCAAACTCGGCGAGCTGCCCGCCAAGGGGTACGCCTCGCACGGCGAGTCCT
GGTCGTACGCCCTCGCGCTGCGCCTGGCCTCCTACGACCTGTTGCGCGCCGAGGGCAACGAGCCGGTGCTCGTCCTGGAC
GACGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCCGAGCTGGTGGCGCCCGGCGAGCAGGTGCTGGTCAC
CGCCGCGGTGGACGACGACGTACCGCATGTGCTGACCGGTGCCCGCTACGCCGTCTCCGGCGGGACGGTGGAACGCGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.989

95.979

0.365

Multiple sequence alignment