Detailed information NTG0407852

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPX86_RS02550
• Genome accession: NZ_CP046793
• Coordinates: 580219..581661 (+)
• Length: 480 a.a.
• NCBI ID: WP_158143957.1
• Uniprot ID: -
• Organism: Vibrio metschnikovii strain 9502-00
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 575219..586661

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX86_RS02525	-	575227..575985 (-)	759	WP_154168365.1	SDR family oxidoreductase	-
GPX86_RS02530	alsS	575982..577688 (-)	1707	WP_158138371.1	acetolactate synthase AlsS	-
GPX86_RS02535	budA	577721..578506 (-)	786	WP_158144947.1	acetolactate decarboxylase	-
GPX86_RS02540	-	578615..579502 (+)	888	WP_158143955.1	LysR family transcriptional regulator	-
GPX86_RS02545	-	579558..579944 (+)	387	WP_158143956.1	DCC1-like thiol-disulfide oxidoreductase family protein	-
GPX86_RS02550	sbcB	580219..581661 (+)	1443	WP_158143957.1	exodeoxyribonuclease I	Machinery gene
GPX86_RS02555	-	581694..582080 (+)	387	WP_158143958.1	CidA/LrgA family protein	-
GPX86_RS02560	-	582080..582757 (+)	678	WP_154168373.1	CidB/LrgB family autolysis modulator	-
GPX86_RS02565	cdd	582921..583808 (+)	888	WP_158143959.1	cytidine deaminase	-
GPX86_RS02570	-	583842..586535 (-)	2694	WP_158143960.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 480 a.a.
• Molecular weight: 54743.05 Da
• Isoelectric Point: 5.9164

>NTDB_id=407852 GPX86_RS02550 WP_158143957.1 580219..581661(+) (sbcB) [Vibrio metschnikovii strain 9502-00]
MKNSRPHNADHQPTFFFLDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPSPEAALITGITPQKAMA
EGLPEPEFIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQQGNSRWDLLDVMRACHALRPEGIEWPE
NQEGFTSFKLEHLSKANGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGML
GRERSYTSWVVPIAWHPTNQNAVIVVDLAKNPEPLFELTSEQLLQRLYTKHDDLAEGELPAPVKLIHLNKCPILAPAKTL
TAENAATIGINREQCLAHLSQIRQQPTLREKLVDVFSAERDFSASSDVDSQLYDGFFSPSDRAAMDIIRSTAPESLADLD
IQFSDQRIAPLLFRYRARHYPWTLNETEQRRWASHCQDYFATQLSSYMLNLENLVEQHQHDAKKIAILKAVYHYVEALAS

Nucleotide

• Length: 1443 bp

>NTDB_id=407852 GPX86_RS02550 WP_158143957.1 580219..581661(+) (sbcB) [Vibrio metschnikovii strain 9502-00]
TTGAAAAATTCCAGACCTCACAACGCAGATCATCAACCGACATTTTTCTTCCTAGATTATGAAACGTGGGGGACGAGCCC
AGCCAAAGATCGTCCCAGCCAGTTTGCTGGTGTGCGTACCGATATGGACTTTAATATCATTGGCGAGCCGCTGGTCATCT
ATTGTCAACTGCCTAGCGACTATTTGCCCTCACCAGAAGCCGCTTTGATAACGGGTATTACGCCACAAAAAGCGATGGCA
GAAGGGTTGCCAGAACCAGAATTTATTGCCCGCATTCATGCTGAACTGGCCACACCGAATACCACCAGTTTAGGCTATAA
CAGCATTCGTTTTGATGATGAAGTAACTCGCTATACCTGTTATCGGAATTTTATTGACCCCTACGCTTGGAGTTGGCAAC
AAGGCAACTCACGCTGGGATTTACTTGATGTGATGCGTGCTTGCCATGCTTTGCGCCCAGAAGGTATTGAATGGCCTGAA
AACCAAGAAGGCTTTACCAGTTTTAAACTAGAGCACCTTTCTAAAGCCAATGGTATAGAACACAGCAATGCTCACGATGC
GATGGCTGATGTGATTGCCACCATTGAGCTCGCAAAAAAAATCAAAGCCGCACAGCCTAAGCTGTTTGATTATTTCTTAT
CGATGCGCCATAAGCGTAAGCTGATTGATTTGGTTGATATTGTTAACATGACGCCATTAATGCATGTCTCTGGCATGCTA
GGACGTGAGCGCAGTTACACCAGTTGGGTTGTACCTATTGCTTGGCACCCCACCAATCAAAATGCCGTAATCGTGGTCGA
TTTGGCGAAAAATCCCGAGCCGTTATTCGAGTTAACCAGCGAGCAACTCTTACAGCGCCTCTATACTAAACATGATGACT
TGGCAGAGGGTGAGCTACCTGCGCCAGTTAAGTTGATTCATTTGAATAAGTGTCCCATTTTAGCGCCAGCGAAAACCCTT
ACCGCTGAAAATGCCGCCACCATAGGGATTAACCGCGAGCAGTGCTTGGCTCATCTTTCGCAAATTCGTCAACAACCAAC
ATTGCGTGAAAAGTTAGTGGATGTGTTTAGTGCTGAACGTGATTTTTCAGCCAGCAGTGATGTCGATAGCCAACTCTATG
ATGGGTTCTTTTCTCCTTCCGATCGCGCGGCAATGGACATTATTCGCTCTACGGCGCCGGAGTCGCTCGCTGATTTAGAT
ATTCAATTCAGTGATCAACGCATTGCGCCCCTGCTGTTTCGTTATCGAGCTCGTCATTATCCTTGGACACTCAATGAAAC
AGAACAGCGCCGCTGGGCAAGCCATTGTCAAGATTACTTTGCTACTCAGTTATCAAGTTATATGCTCAACTTAGAAAATT
TGGTCGAGCAACATCAACACGATGCTAAAAAAATCGCCATACTGAAAGCGGTGTATCATTATGTTGAAGCGCTGGCTTCT
TAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (216-476)

• Exonuclease (RNase_T) (17-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	81.489	97.917	0.798