Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY30_RS13675 Genome accession   NZ_CP046791
Coordinates   2784725..2785339 (+) Length   204 a.a.
NCBI ID   WP_039430441.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2462-79     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2779725..2790339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS13655 - 2780048..2780971 (-) 924 WP_158134394.1 ABC transporter ATP-binding protein -
  GPY30_RS13660 - 2781123..2782781 (-) 1659 WP_158134396.1 SulP family inorganic anion transporter -
  GPY30_RS13665 can 2783018..2783686 (+) 669 WP_158134397.1 carbonate dehydratase -
  GPY30_RS13670 hpt 2783803..2784333 (-) 531 WP_039430440.1 hypoxanthine phosphoribosyltransferase -
  GPY30_RS13675 opaR 2784725..2785339 (+) 615 WP_039430441.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GPY30_RS13680 lpdA 2785576..2787003 (-) 1428 WP_039430442.1 dihydrolipoyl dehydrogenase -
  GPY30_RS13685 aceF 2787259..2789169 (-) 1911 WP_158134399.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23492.92 Da        Isoelectric Point: 6.3361

>NTDB_id=407830 GPY30_RS13675 WP_039430441.1 2784725..2785339(+) (opaR) [Vibrio navarrensis strain 2462-79]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAQDNLKNITNAMIELVTQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFVRAIERGEVCDKHSPE
DLANMFLGICYSLFVQANRAKSEAELTKLVNSYLQMLCIYKGES

Nucleotide


Download         Length: 615 bp        

>NTDB_id=407830 GPY30_RS13675 WP_039430441.1 2784725..2785339(+) (opaR) [Vibrio navarrensis strain 2462-79]
ATGGACTCAATAGCAAAGAGACCTCGAACTCGTTTATCTCCACTGAAACGTAAACAACAACTGATGGAAATCGCACTGGA
AGTGTTTGCTCGTCGTGGCATCGGCCGCGGTGGTCACGCAGACATCGCCGAGATTGCACAAGTTTCTGTCGCCACCGTAT
TTAACTATTTTCCGACACGTGAAGATCTGGTTGATGAAGTGCTCAATCATGTCGTGCGTCAGTTTTCAAACTTCCTGTCC
GATAACATTGACCTCGACATTCACGCGCAAGATAACCTCAAAAACATCACCAACGCGATGATTGAACTGGTGACTCAAGA
CTGTCATTGGCTCAAAGTGTGGTTTGAATGGAGCGCATCAACGCGTGATGAAGTATGGCCACTATTTGTCACCACCAACC
GCACTAACCAACTGCTGGTACAGAACATGTTTGTTCGCGCCATCGAGCGTGGCGAAGTGTGTGATAAACACAGCCCGGAA
GATCTGGCGAATATGTTCCTTGGTATCTGCTACTCACTGTTTGTGCAAGCCAACCGCGCCAAGAGCGAAGCGGAACTGAC
TAAACTGGTCAACAGCTACCTACAAATGCTTTGTATCTATAAGGGTGAGAGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

88.67

99.51

0.882
  hapR Vibrio cholerae C6706

71.859

97.549

0.701
  hapR Vibrio cholerae strain A1552

71.859

97.549

0.701

Multiple sequence alignment