Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY29_RS22045 Genome accession   NZ_CP046788
Coordinates   1096555..1097736 (-) Length   393 a.a.
NCBI ID   WP_029839180.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091555..1102736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS22030 - 1092858..1093406 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  GPY29_RS22035 - 1093492..1094109 (-) 618 WP_029839177.1 HAD family phosphatase -
  GPY29_RS22040 cqsS 1094429..1096477 (+) 2049 WP_025588878.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY29_RS22045 cqsA 1096555..1097736 (-) 1182 WP_029839180.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY29_RS22050 ylqF 1098090..1099034 (-) 945 WP_029839181.1 ribosome biogenesis GTPase YlqF -
  GPY29_RS22055 tnpA 1099442..1099840 (+) 399 WP_031813145.1 IS200/IS605 family transposase -
  GPY29_RS22060 - 1099938..1100675 (-) 738 WP_025540677.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43829.22 Da        Isoelectric Point: 6.6125

>NTDB_id=407803 GPY29_RS22045 WP_029839180.1 1096555..1097736(-) (cqsA) [Vibrio parahaemolyticus strain 2013V-1174]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HMRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPSKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFKIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=407803 GPY29_RS22045 WP_029839180.1 1096555..1097736(-) (cqsA) [Vibrio parahaemolyticus strain 2013V-1174]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAGCCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATATGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCTCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAGCAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAAAATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.14

98.473

0.573

Multiple sequence alignment