Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY29_RS22040 Genome accession   NZ_CP046788
Coordinates   1094429..1096477 (+) Length   682 a.a.
NCBI ID   WP_025588878.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089429..1101477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS22020 dcuC 1089741..1091108 (-) 1368 WP_005454288.1 anaerobic C4-dicarboxylate transporter DcuC -
  GPY29_RS22025 - 1091462..1092586 (-) 1125 WP_029839175.1 fatty acid desaturase -
  GPY29_RS22030 - 1092858..1093406 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  GPY29_RS22035 - 1093492..1094109 (-) 618 WP_029839177.1 HAD family phosphatase -
  GPY29_RS22040 cqsS 1094429..1096477 (+) 2049 WP_025588878.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY29_RS22045 cqsA 1096555..1097736 (-) 1182 WP_029839180.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY29_RS22050 ylqF 1098090..1099034 (-) 945 WP_029839181.1 ribosome biogenesis GTPase YlqF -
  GPY29_RS22055 tnpA 1099442..1099840 (+) 399 WP_031813145.1 IS200/IS605 family transposase -
  GPY29_RS22060 - 1099938..1100675 (-) 738 WP_025540677.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78315.16 Da        Isoelectric Point: 5.8750

>NTDB_id=407802 GPY29_RS22040 WP_025588878.1 1094429..1096477(+) (cqsS) [Vibrio parahaemolyticus strain 2013V-1174]
MDSIRKVYEYAEPNLTLVGWMGFIGFPLYYFVWDFMFPQSYENLPLRLFCSALFFGIIFRNRLSSSWRKYVHVYYQITIT
TCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWIAKGFHLDITMDWTHVPIFLFIY
VFGNMFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKAMGEKDQYVMSGEDVTLLREVSEDAM
NIIHSGNETIDLLLTSIDENRVSRSSFKRYSAQSVVEKAIESFSYKRSTDRFAISFDARSEFDFLGSDTLLKYVMYNLFK
NAFHHRSSDEFHIHVSMQSNDTVNQIVVTDNGSGIAPDVIRHIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIKCISQP
GEWSQFTLTFPPITSDTVTEIKDELTKMKSILLVSNQDIIVQKMADISRFMGFDVTVLDVKSVFKKKEYEFEFDLIFVDV
ESLDVLENQLDRIESLLSFTEARVVYLFEHKPAQRAKKVGHDPIWVETQAWLLNTKATIERLLYDSTYISSTLPSAPLDK
SIKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMDGVEASRRIRNSEKPYATVP
IIAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=407802 GPY29_RS22040 WP_025588878.1 1094429..1096477(+) (cqsS) [Vibrio parahaemolyticus strain 2013V-1174]
ATGGATTCGATACGTAAGGTATATGAGTACGCAGAGCCCAATTTAACATTAGTTGGTTGGATGGGATTTATTGGCTTCCC
GCTCTACTACTTCGTTTGGGACTTCATGTTCCCGCAATCCTATGAAAACTTGCCGCTACGTTTGTTCTGTTCCGCACTGT
TTTTTGGCATCATTTTTCGTAACCGTTTGTCGTCATCATGGCGAAAGTACGTGCACGTCTATTATCAAATAACGATTACG
ACCTGTTTACCTTTCTTCTTTTTTTATATGTTGCTCATGAATGATTGGTCCAATGTTTGGGTGATGTCATTCATGTCGGC
TATTTTCCTGCATATTTTGTTGGTTCATGTCACAAGGGTCATGTTTGCTCAGACGTTCGCTGGTATTGGTCTAGCGACGT
TTTTTGCGTGGATCGCGAAAGGCTTTCATCTCGATATCACAATGGATTGGACGCATGTGCCGATATTTTTGTTTATTTAT
GTGTTTGGCAACATGTTCTATTTCCGAAATCAGGTCGAGCATGAAGCAAAAGTATCGCTCGCTAAGTCGTTTGGCGCTGG
TATTGCTCATGAAATGCGTAATCCACTCAGTGGCTTATGTACGTCGATAGATGTTATTCAGTCTGTCTTGCCTAACAAAA
AGGCGATGGGCGAAAAAGATCAGTATGTCATGAGTGGTGAAGACGTAACCTTGCTCCGTGAAGTGAGTGAAGATGCGATG
AACATTATTCATTCAGGCAACGAGACAATCGATTTATTGCTCACCTCGATTGATGAAAACCGCGTATCTCGCTCTTCCTT
CAAAAGATATTCTGCTCAATCGGTGGTTGAAAAAGCCATTGAGAGTTTCAGTTATAAACGTTCGACAGACAGGTTCGCGA
TCTCATTCGATGCAAGAAGTGAGTTTGATTTTTTGGGTAGCGATACATTGTTAAAGTACGTCATGTATAACTTGTTTAAG
AACGCATTTCATCATCGCAGTTCAGACGAGTTTCATATTCATGTGAGTATGCAAAGTAATGACACGGTCAACCAAATTGT
AGTGACGGACAATGGCTCAGGTATTGCGCCAGATGTGATTCGACATATCTTTCAGGACTTCTATACCACAGGTAAGTCGG
GCAGTTATGGCCTTGGACTACCGTTCTGTAAGAAAGTCATGCGTTCATTTGGTGGTAATATTAAGTGCATTTCCCAGCCG
GGAGAGTGGTCACAGTTTACGTTGACTTTTCCGCCTATCACATCAGATACGGTAACGGAAATTAAAGATGAGCTGACCAA
AATGAAATCGATTTTATTGGTCAGTAATCAAGACATTATCGTGCAAAAAATGGCAGATATTAGTCGCTTCATGGGATTTG
ACGTCACCGTTTTAGATGTAAAAAGCGTCTTTAAAAAGAAAGAATACGAGTTTGAATTTGACCTGATATTTGTCGATGTG
GAAAGCCTTGATGTTTTAGAAAACCAATTAGACAGAATCGAATCATTACTTTCATTTACTGAAGCGCGTGTGGTGTATCT
TTTTGAGCACAAACCTGCGCAACGAGCTAAAAAAGTTGGCCATGACCCGATTTGGGTAGAGACTCAAGCGTGGCTGCTAA
ACACTAAAGCTACGATTGAACGTTTGCTTTACGATTCCACTTATATCTCGTCAACCTTGCCATCTGCGCCTTTAGATAAA
TCCATCAAACGAACCATCATGGTTGTGGATGATAACGAGTCTCTGCGTAAGTTTACGGCGATGTTACTAGAGAAGCAGGG
ATTTGAAGTGGTACAAAAGGAAGATGGTCAGCAAGCATTGGACACTCTTGAAAAAGAAAATATCGATCTGATTTTAATGG
ATATTGAGATGCCAATCATGGACGGAGTAGAAGCGTCGCGACGTATCCGTAACTCAGAAAAGCCGTATGCAACTGTGCCG
ATTATTGCGCATACGGGAGACAGTTCTCCTGTGACGCTAGATAAAATTGGCTCATCCGGCATGTCCGACTTTATCGTTAA
ACCTGCAGATAAGAATCGCCTTTTCGATAAAATTGCTAACTGGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-412)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.834

100

0.491

Multiple sequence alignment