Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GPY29_RS16800 Genome accession   NZ_CP046787
Coordinates   3351022..3351600 (-) Length   192 a.a.
NCBI ID   WP_029837358.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3346022..3356600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS16775 aroB 3346312..3347412 (-) 1101 WP_029837360.1 3-dehydroquinate synthase -
  GPY29_RS16780 aroK 3347444..3347962 (-) 519 WP_005381319.1 shikimate kinase AroK -
  GPY29_RS16785 pilQ 3348151..3349899 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  GPY29_RS16790 pilP 3349931..3350446 (-) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  GPY29_RS16795 pilO 3350436..3351029 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY29_RS16800 pilN 3351022..3351600 (-) 579 WP_029837358.1 PilN domain-containing protein Machinery gene
  GPY29_RS16805 pilM 3351584..3352600 (-) 1017 WP_029837357.1 type IV pilus assembly protein PilM Machinery gene
  GPY29_RS16810 - 3352743..3355313 (+) 2571 WP_005496567.1 PBP1A family penicillin-binding protein -
  GPY29_RS16815 oxyR 3355369..3356277 (-) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22424.88 Da        Isoelectric Point: 6.6554

>NTDB_id=407799 GPY29_RS16800 WP_029837358.1 3351022..3351600(-) (pilN) [Vibrio parahaemolyticus strain 2013V-1174]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKNEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=407799 GPY29_RS16800 WP_029837358.1 3351022..3351600(-) (pilN) [Vibrio parahaemolyticus strain 2013V-1174]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAACGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.333

100

0.833
  pilN Vibrio cholerae strain A1552

62.983

94.271

0.594

Multiple sequence alignment