Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY29_RS15415 Genome accession   NZ_CP046787
Coordinates   3088038..3088652 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083038..3093652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS15390 - 3083324..3084241 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  GPY29_RS15400 - 3084493..3086163 (-) 1671 WP_025442234.1 SulP family inorganic anion transporter -
  GPY29_RS15405 can 3086447..3087115 (+) 669 WP_005462578.1 carbonate dehydratase -
  GPY29_RS15410 hpt 3087189..3087719 (-) 531 WP_029840285.1 hypoxanthine phosphoribosyltransferase -
  GPY29_RS15415 opaR 3088038..3088652 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  GPY29_RS15420 lpdA 3088780..3090207 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  GPY29_RS15425 aceF 3090476..3092368 (-) 1893 WP_031829363.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=407782 GPY29_RS15415 WP_005479697.1 3088038..3088652(+) (opaR) [Vibrio parahaemolyticus strain 2013V-1174]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=407782 GPY29_RS15415 WP_005479697.1 3088038..3088652(+) (opaR) [Vibrio parahaemolyticus strain 2013V-1174]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCACAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAGCATGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment