Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPY29_RS13380 Genome accession   NZ_CP046787
Coordinates   2655002..2656405 (-) Length   467 a.a.
NCBI ID   WP_029831328.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2650002..2661405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS13345 moaE 2650575..2651030 (-) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -
  GPY29_RS13350 moaD 2651032..2651289 (-) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  GPY29_RS13355 moaC 2651286..2651765 (-) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPY29_RS13360 moaB 2651792..2652304 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  GPY29_RS13365 moaA 2652406..2653395 (-) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  GPY29_RS13370 - 2653691..2654584 (+) 894 WP_005494500.1 YvcK family protein -
  GPY29_RS13375 luxU 2654661..2654999 (-) 339 WP_025500803.1 quorum-sensing phosphorelay protein LuxU -
  GPY29_RS13380 luxO 2655002..2656405 (-) 1404 WP_029831328.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPY29_RS13385 uvrB 2656695..2658725 (-) 2031 WP_021454125.1 excinuclease ABC subunit UvrB -
  GPY29_RS13400 rsxA 2659716..2660294 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  GPY29_RS13405 rsxB 2660298..2660894 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52155.68 Da        Isoelectric Point: 6.2547

>NTDB_id=407780 GPY29_RS13380 WP_029831328.1 2655002..2656405(-) (luxO) [Vibrio parahaemolyticus strain 2013V-1174]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEILPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=407780 GPY29_RS13380 WP_029831328.1 2655002..2656405(-) (luxO) [Vibrio parahaemolyticus strain 2013V-1174]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCACGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCGGCCATACCTAAAGACTTAATCGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACCTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGATGTGCGTTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCCCACGAAGAGGGCAAAAACTTTGTTCGTTT
TTCTCAAGAAGTGATTGACCGCTTTAACAGCTATGAGTGGCCGGGTAACGTCCGGCAACTACAAAACGTATTGCGCAATA
TCGTGGTTCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTAAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCTTGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCACGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368

Multiple sequence alignment