Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY45_RS08295 Genome accession   NZ_CP046785
Coordinates   1621347..1621961 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1136     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1616347..1626961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY45_RS08285 aceF 1617638..1619524 (+) 1887 WP_021453621.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPY45_RS08290 lpdA 1619792..1621219 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  GPY45_RS08295 opaR 1621347..1621961 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  GPY45_RS08300 hpt 1622280..1622810 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  GPY45_RS08305 can 1622884..1623552 (-) 669 WP_005462578.1 carbonate dehydratase -
  GPY45_RS08310 - 1623836..1625506 (+) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  GPY45_RS08320 - 1625759..1626676 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=407747 GPY45_RS08295 WP_005479697.1 1621347..1621961(-) (opaR) [Vibrio parahaemolyticus strain 2013V-1136]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=407747 GPY45_RS08295 WP_005479697.1 1621347..1621961(-) (opaR) [Vibrio parahaemolyticus strain 2013V-1136]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTATCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment