Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GPY39_RS12505 Genome accession   NZ_CP046783
Coordinates   2466841..2467419 (-) Length   192 a.a.
NCBI ID   WP_021449760.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1181     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2461841..2472419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY39_RS12480 aroB 2462131..2463231 (-) 1101 WP_005480443.1 3-dehydroquinate synthase -
  GPY39_RS12485 aroK 2463263..2463781 (-) 519 WP_005381319.1 shikimate kinase AroK -
  GPY39_RS12490 pilQ 2463970..2465718 (-) 1749 WP_025442303.1 type IV pilus secretin PilQ family protein Machinery gene
  GPY39_RS12495 pilP 2465750..2466265 (-) 516 WP_021449759.1 pilus assembly protein PilP Machinery gene
  GPY39_RS12500 pilO 2466255..2466848 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY39_RS12505 pilN 2466841..2467419 (-) 579 WP_021449760.1 PilN domain-containing protein Machinery gene
  GPY39_RS12510 pilM 2467403..2468419 (-) 1017 WP_021449761.1 type IV pilus assembly protein PilM Machinery gene
  GPY39_RS12515 - 2468562..2471132 (+) 2571 WP_025622219.1 PBP1A family penicillin-binding protein -
  GPY39_RS12520 oxyR 2471188..2472096 (-) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22468.94 Da        Isoelectric Point: 6.6554

>NTDB_id=407700 GPY39_RS12505 WP_021449760.1 2466841..2467419(-) (pilN) [Vibrio parahaemolyticus strain 2013V-1181]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVSKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=407700 GPY39_RS12505 WP_021449760.1 2466841..2467419(-) (pilN) [Vibrio parahaemolyticus strain 2013V-1181]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTAGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAACAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

82.812

100

0.828
  pilN Vibrio cholerae strain A1552

62.431

94.271

0.589

Multiple sequence alignment