Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SSUD9_RS03175 Genome accession   NC_017620
Coordinates   625585..626181 (+) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis D9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 620585..631181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS03160 (SSUD9_0633) - 621513..622715 (-) 1203 WP_014636845.1 IS110 family transposase -
  SSUD9_RS03165 (SSUD9_0634) - 622954..623409 (+) 456 WP_002935846.1 ATP-binding cassette domain-containing protein -
  SSUD9_RS03170 (SSUD9_0635) pbp2b 623501..625576 (+) 2076 WP_002935847.1 penicillin-binding protein PBP2B -
  SSUD9_RS03175 (SSUD9_0636) recR 625585..626181 (+) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  SSUD9_RS03180 (SSUD9_0637) - 626286..627332 (+) 1047 WP_002935850.1 D-alanine--D-alanine ligase -
  SSUD9_RS03185 (SSUD9_0638) - 627420..627800 (+) 381 WP_013730250.1 OsmC family protein -
  SSUD9_RS03190 (SSUD9_0639) - 627802..628878 (+) 1077 WP_002935854.1 ABC transporter permease -
  SSUD9_RS03195 (SSUD9_0640) - 628888..629556 (+) 669 WP_002935856.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=40769 SSUD9_RS03175 WP_002935848.1 625585..626181(+) (recR) [Streptococcus suis D9]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=40769 SSUD9_RS03175 WP_002935848.1 625585..626181(+) (recR) [Streptococcus suis D9]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCTATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATTGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAAGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment