Detailed information NTG0407687

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY39_RS11150
• Genome accession: NZ_CP046783
• Coordinates: 2211116..2211985 (+)
• Length: 289 a.a.
• NCBI ID: WP_021450018.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2013V-1181
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2206116..2216985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY39_RS11130	nadC	2206504..2207391 (+)	888	WP_021450015.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GPY39_RS11135	-	2207655..2208119 (+)	465	WP_021450016.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GPY39_RS11140	pilB	2208119..2209804 (+)	1686	WP_021450017.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY39_RS11145	pilC	2209828..2211051 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
GPY39_RS11150	pilD	2211116..2211985 (+)	870	WP_021450018.1	A24 family peptidase	Machinery gene
GPY39_RS11155	coaE	2211986..2212600 (+)	615	WP_021450019.1	dephospho-CoA kinase	-
GPY39_RS11160	zapD	2212628..2213368 (+)	741	WP_021450020.1	cell division protein ZapD	-
GPY39_RS11165	yacG	2213437..2213631 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GPY39_RS11170	rplS	2213983..2214336 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
GPY39_RS11175	trmD	2214378..2215121 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY39_RS11180	rimM	2215149..2215697 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
GPY39_RS11185	rpsP	2215726..2215974 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32409.53 Da
• Isoelectric Point: 7.1970

>NTDB_id=407687 GPY39_RS11150 WP_021450018.1 2211116..2211985(+) (pilD) [Vibrio parahaemolyticus strain 2013V-1181]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSMPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=407687 GPY39_RS11150 WP_021450018.1 2211116..2211985(+) (pilD) [Vibrio parahaemolyticus strain 2013V-1181]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCATGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTATGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446