Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY39_RS11100 Genome accession   NZ_CP046783
Coordinates   2197629..2198243 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1181     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2192629..2203243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY39_RS11075 - 2192915..2193832 (-) 918 WP_021450010.1 ABC transporter ATP-binding protein -
  GPY39_RS11085 - 2194085..2195755 (-) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  GPY39_RS11090 can 2196039..2196707 (+) 669 WP_005462578.1 carbonate dehydratase -
  GPY39_RS11095 hpt 2196780..2197310 (-) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  GPY39_RS11100 opaR 2197629..2198243 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  GPY39_RS11105 lpdA 2198370..2199797 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  GPY39_RS11110 aceF 2200066..2201955 (-) 1890 WP_021450013.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=407684 GPY39_RS11100 WP_005479697.1 2197629..2198243(+) (opaR) [Vibrio parahaemolyticus strain 2013V-1181]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=407684 GPY39_RS11100 WP_005479697.1 2197629..2198243(+) (opaR) [Vibrio parahaemolyticus strain 2013V-1181]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAGGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment