Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY25_RS16175 Genome accession   NZ_CP046779
Coordinates   3236524..3237138 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2014V-1066     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3231524..3242138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY25_RS16150 - 3231810..3232727 (-) 918 WP_005493995.1 ABC transporter ATP-binding protein -
  GPY25_RS16160 - 3232980..3234650 (-) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  GPY25_RS16165 can 3234934..3235602 (+) 669 WP_005462578.1 carbonate dehydratase -
  GPY25_RS16170 hpt 3235675..3236205 (-) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  GPY25_RS16175 opaR 3236524..3237138 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  GPY25_RS16180 lpdA 3237265..3238692 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  GPY25_RS16185 aceF 3238961..3240862 (-) 1902 WP_005493990.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=407612 GPY25_RS16175 WP_005479697.1 3236524..3237138(+) (opaR) [Vibrio parahaemolyticus strain 2014V-1066]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=407612 GPY25_RS16175 WP_005479697.1 3236524..3237138(+) (opaR) [Vibrio parahaemolyticus strain 2014V-1066]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment