Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY34_RS20215 Genome accession   NZ_CP046778
Coordinates   2322600..2323214 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2014V-1125     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2317600..2328214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY34_RS20205 aceF 2318876..2320777 (+) 1902 WP_005493990.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPY34_RS20210 lpdA 2321046..2322473 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  GPY34_RS20215 opaR 2322600..2323214 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  GPY34_RS20220 hpt 2323533..2324063 (+) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  GPY34_RS20225 can 2324136..2324804 (-) 669 WP_005462578.1 carbonate dehydratase -
  GPY34_RS20230 - 2325088..2326758 (+) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  GPY34_RS20240 - 2327011..2327928 (+) 918 WP_005493995.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=407576 GPY34_RS20215 WP_005479697.1 2322600..2323214(-) (opaR) [Vibrio parahaemolyticus strain 2014V-1125]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=407576 GPY34_RS20215 WP_005479697.1 2322600..2323214(-) (opaR) [Vibrio parahaemolyticus strain 2014V-1125]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment