Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | GPY46_RS22150 | Genome accession | NZ_CP046776 |
| Coordinates | 2710221..2710835 (+) | Length | 204 a.a. |
| NCBI ID | WP_005479697.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain AM43962 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2705221..2715835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY46_RS22125 | - | 2705506..2706423 (-) | 918 | WP_158128013.1 | ABC transporter ATP-binding protein | - |
| GPY46_RS22135 | - | 2706676..2708346 (-) | 1671 | WP_021450011.1 | SulP family inorganic anion transporter | - |
| GPY46_RS22140 | can | 2708630..2709298 (+) | 669 | WP_005462578.1 | carbonate dehydratase | - |
| GPY46_RS22145 | hpt | 2709372..2709902 (-) | 531 | WP_005479701.1 | hypoxanthine phosphoribosyltransferase | - |
| GPY46_RS22150 | opaR | 2710221..2710835 (+) | 615 | WP_005479697.1 | transcriptional regulator OpaR | Regulator |
| GPY46_RS22155 | lpdA | 2710963..2712390 (-) | 1428 | WP_005479684.1 | dihydrolipoyl dehydrogenase | - |
| GPY46_RS22160 | aceF | 2712659..2714545 (-) | 1887 | WP_031847487.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23634.94 Da Isoelectric Point: 6.0781
>NTDB_id=407514 GPY46_RS22150 WP_005479697.1 2710221..2710835(+) (opaR) [Vibrio parahaemolyticus strain AM43962]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH
Nucleotide
Download Length: 615 bp
>NTDB_id=407514 GPY46_RS22150 WP_005479697.1 2710221..2710835(+) (opaR) [Vibrio parahaemolyticus strain AM43962]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTGGATATGCTTTGCATCTACAATCGCGAACACTAA
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTGGATATGCTTTGCATCTACAATCGCGAACACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| hapR | Vibrio cholerae C6706 |
72.222 |
97.059 |
0.701 |
| hapR | Vibrio cholerae strain A1552 |
72.222 |
97.059 |
0.701 |