Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPY46_RS14290 Genome accession   NZ_CP046776
Coordinates   1098057..1099460 (+) Length   467 a.a.
NCBI ID   WP_180792522.1    Uniprot ID   A0AAX0MGB0
Organism   Vibrio parahaemolyticus strain AM43962     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093057..1104460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY46_RS14265 rsxB 1093568..1094164 (-) 597 WP_005480813.1 electron transport complex subunit RsxB -
  GPY46_RS14270 rsxA 1094168..1094746 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  GPY46_RS14285 uvrB 1095737..1097767 (+) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  GPY46_RS14290 luxO 1098057..1099460 (+) 1404 WP_180792522.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPY46_RS14295 luxU 1099463..1099801 (+) 339 WP_025793085.1 quorum-sensing phosphorelay protein LuxU -
  GPY46_RS14300 - 1099878..1100771 (-) 894 WP_005494500.1 YvcK family protein -
  GPY46_RS14305 moaA 1101067..1102056 (+) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  GPY46_RS14310 moaB 1102159..1102671 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  GPY46_RS14315 moaC 1102698..1103177 (+) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPY46_RS14320 moaD 1103174..1103431 (+) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  GPY46_RS14325 moaE 1103433..1103888 (+) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52272.85 Da        Isoelectric Point: 6.4241

>NTDB_id=407503 GPY46_RS14290 WP_180792522.1 1098057..1099460(+) (luxO) [Vibrio parahaemolyticus strain AM43962]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTRMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=407503 GPY46_RS14290 WP_180792522.1 1098057..1099460(+) (luxO) [Vibrio parahaemolyticus strain AM43962]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTTTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCACCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGAGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTACCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTACTACGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.277

95.931

0.837
  pilR Pseudomonas aeruginosa PAK

38.17

95.931

0.366

Multiple sequence alignment