Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY59_RS22060 Genome accession   NZ_CP046772
Coordinates   2851676..2852290 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2846676..2857290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS22040 - 2846960..2847877 (-) 918 WP_005380000.1 ABC transporter ATP-binding protein -
  GPY59_RS22045 - 2848128..2849798 (-) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  GPY59_RS22050 can 2850080..2850748 (+) 669 WP_005379996.1 carbonate dehydratase -
  GPY59_RS22055 hpt 2850826..2851356 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  GPY59_RS22060 opaR 2851676..2852290 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  GPY59_RS22065 lpdA 2852429..2853856 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  GPY59_RS22070 aceF 2854124..2856016 (-) 1893 WP_005396678.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=407470 GPY59_RS22060 WP_005379994.1 2851676..2852290(+) (opaR) [Vibrio alginolyticus strain 2014V-1011]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=407470 GPY59_RS22060 WP_005379994.1 2851676..2852290(+) (opaR) [Vibrio alginolyticus strain 2014V-1011]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGCTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTTTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCGTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment