Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPY59_RS10190 Genome accession   NZ_CP046772
Coordinates   404748..405755 (-) Length   335 a.a.
NCBI ID   WP_158173611.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 399748..410755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS10175 hslU 401952..403283 (-) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -
  GPY59_RS10180 hslV 403307..403858 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  GPY59_RS10185 ftsN 403974..404522 (-) 549 WP_017820300.1 cell division protein FtsN -
  GPY59_RS10190 cytR 404748..405755 (-) 1008 WP_158173611.1 DNA-binding transcriptional regulator CytR Regulator
  GPY59_RS10195 priA 406080..408284 (-) 2205 WP_158173612.1 primosomal protein N' -
  GPY59_RS10205 rpmE 408580..408801 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  GPY59_RS10210 rpsJ 409257..409568 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  GPY59_RS10215 rplC 409583..410212 (+) 630 WP_158173613.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36882.38 Da        Isoelectric Point: 6.2447

>NTDB_id=407455 GPY59_RS10190 WP_158173611.1 404748..405755(-) (cytR) [Vibrio alginolyticus strain 2014V-1011]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELSEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=407455 GPY59_RS10190 WP_158173611.1 404748..405755(-) (cytR) [Vibrio alginolyticus strain 2014V-1011]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGTCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.904

99.701

0.976
  cytR Vibrio cholerae C6706

89.222

99.701

0.89

Multiple sequence alignment