Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY10_RS12460 Genome accession   NZ_CP046767
Coordinates   2652840..2653442 (-) Length   200 a.a.
NCBI ID   WP_158151732.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2013V-1300     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2647840..2658442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY10_RS12450 aceF 2649137..2651032 (+) 1896 WP_047459080.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPY10_RS12455 lpdA 2651291..2652718 (+) 1428 WP_020331989.1 dihydrolipoyl dehydrogenase -
  GPY10_RS12460 opaR 2652840..2653442 (-) 603 WP_158151732.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GPY10_RS12465 hpt 2653763..2654290 (+) 528 WP_020331991.1 hypoxanthine phosphoribosyltransferase -
  GPY10_RS12470 can 2654340..2655007 (-) 668 Protein_2391 carbonate dehydratase -
  GPY10_RS12475 - 2655351..2656268 (+) 918 WP_020331993.1 ABC transporter ATP-binding protein -
  GPY10_RS12480 - 2656273..2657042 (+) 770 Protein_2393 ABC transporter permease -
  GPY10_RS12485 panC 2657122..2658003 (-) 882 WP_020331996.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23321.67 Da        Isoelectric Point: 5.9488

>NTDB_id=407432 GPY10_RS12460 WP_158151732.1 2652840..2653442(-) (opaR) [Vibrio fluvialis strain 2013V-1300]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDIHAKENLTNITDEMVKLANEDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLVKNMFSKAIERGEVCEQHDP
EDLATLFHGVCYSLFVRDEGYMRKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 603 bp        

>NTDB_id=407432 GPY10_RS12460 WP_158151732.1 2652840..2653442(-) (opaR) [Vibrio fluvialis strain 2013V-1300]
ATGGACGCATCTATAGAGAAACGCCCTAGAACGCGGCTATCTCCTCAAAAACGTAAACTCCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAAACGAGGCATTGGCCGTGGTGGTCATGCGGATATCGCAGAAATTGCTCAAGTTTCTGTCGCCACCG
TGTTCAACTACTTCCCTACTCGTGAAGATTTGGTCGACGACGTACTGACTTACGTGGTTCGCCAGTTTTCCAACTTTCTC
ACCGACAACATCGATCTCGATATTCACGCGAAAGAGAACCTCACCAACATCACCGATGAAATGGTTAAGCTGGCCAATGA
AGATTGCCACTGGCTGAAAGTGTGGTTTGAATGGAGCGCCTCGACGCGTGACGAAGTATGGCCACTGTTTGTATCCAGTA
ACCGTACCAACCAGTTGCTGGTGAAGAACATGTTCTCGAAAGCCATCGAGCGCGGTGAAGTGTGTGAACAGCACGACCCT
GAAGATTTGGCGACGCTGTTCCACGGTGTCTGCTACTCACTGTTTGTTCGCGATGAAGGCTACATGCGTAAACTGGTGAA
AAGCTACTTGGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

79.208

100

0.8
  hapR Vibrio cholerae C6706

77.228

100

0.78
  hapR Vibrio cholerae strain A1552

77.228

100

0.78

Multiple sequence alignment