Detailed information NTG0407379

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY19_RS07710
• Genome accession: NZ_CP046763
• Coordinates: 1564413..1565420 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 2012AW-0353
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1559413..1570420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY19_RS07680	zapB	1559582..1559824 (+)	243	WP_005481417.1	cell division protein ZapB	-
GPY19_RS07685	rraA	1559929..1560441 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GPY19_RS07690	-	1560518..1561435 (-)	918	WP_031781986.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GPY19_RS07695	hslU	1561620..1562951 (-)	1332	WP_005457198.1	HslU--HslV peptidase ATPase subunit	-
GPY19_RS07700	hslV	1562975..1563526 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GPY19_RS07705	ftsN	1563691..1564236 (-)	546	WP_005481405.1	cell division protein FtsN	-
GPY19_RS07710	cytR	1564413..1565420 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
GPY19_RS07715	priA	1565753..1567957 (-)	2205	WP_154119467.1	primosomal protein N'	-
GPY19_RS07725	rpmE	1568252..1568473 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY19_RS07730	rpsJ	1568931..1569242 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY19_RS07735	rplC	1569257..1569886 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=407379 GPY19_RS07710 WP_005481416.1 1564413..1565420(-) (cytR) [Vibrio parahaemolyticus strain 2012AW-0353]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=407379 GPY19_RS07710 WP_005481416.1 1564413..1565420(-) (cytR) [Vibrio parahaemolyticus strain 2012AW-0353]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
CGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGTCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904