Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY19_RS03140 Genome accession   NZ_CP046763
Coordinates   673056..673670 (+) Length   204 a.a.
NCBI ID   WP_025818581.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0353     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 668056..678670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY19_RS03115 - 668341..669258 (-) 918 WP_024702450.1 ABC transporter ATP-binding protein -
  GPY19_RS03125 - 669511..671181 (-) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  GPY19_RS03130 can 671465..672133 (+) 669 WP_005462578.1 carbonate dehydratase -
  GPY19_RS03135 hpt 672207..672737 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  GPY19_RS03140 opaR 673056..673670 (+) 615 WP_025818581.1 transcriptional regulator OpaR Regulator
  GPY19_RS03145 lpdA 673798..675224 (-) 1427 Protein_594 dihydrolipoyl dehydrogenase -
  GPY19_RS03150 aceF 675493..677379 (-) 1887 WP_021453621.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.98 Da        Isoelectric Point: 6.2937

>NTDB_id=407352 GPY19_RS03140 WP_025818581.1 673056..673670(+) (opaR) [Vibrio parahaemolyticus strain 2012AW-0353]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDKHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=407352 GPY19_RS03140 WP_025818581.1 673056..673670(+) (opaR) [Vibrio parahaemolyticus strain 2012AW-0353]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGACAAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

99.51

100

0.995
  hapR Vibrio cholerae C6706

72.727

97.059

0.706
  hapR Vibrio cholerae strain A1552

72.727

97.059

0.706

Multiple sequence alignment