Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY27_RS02180 Genome accession   NZ_CP046761
Coordinates   419047..419661 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM46865     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 414047..424661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY27_RS02170 aceF 415336..417222 (+) 1887 WP_015297248.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPY27_RS02175 lpdA 417492..418919 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  GPY27_RS02180 opaR 419047..419661 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  GPY27_RS02185 hpt 419980..420510 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  GPY27_RS02190 can 420585..421253 (-) 669 WP_005462578.1 carbonate dehydratase -
  GPY27_RS02195 - 421537..423207 (+) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  GPY27_RS02205 - 423459..424376 (+) 918 WP_069485416.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=407322 GPY27_RS02180 WP_005479697.1 419047..419661(-) (opaR) [Vibrio parahaemolyticus strain AM46865]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=407322 GPY27_RS02180 WP_005479697.1 419047..419661(-) (opaR) [Vibrio parahaemolyticus strain AM46865]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment