Detailed information NTG0040729

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SSU12_RS10385
• Genome accession: NC_017619
• Coordinates: 2082977..2084071 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis SS12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2077977..2089071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSU12_RS10360 (SSU12_2091)	pgsA	2078496..2079035 (-)	540	WP_012028045.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SSU12_RS10365 (SSU12_2092)	rodZ	2079045..2079902 (-)	858	WP_012028600.1	cytoskeleton protein RodZ	-
SSU12_RS10370 (SSU12_2093)	yfmH	2079984..2081267 (-)	1284	WP_012775413.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SSU12_RS10375 (SSU12_2094)	yfmF	2081264..2082517 (-)	1254	WP_012028048.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SSU12_RS10380 (SSU12_2095)	yaaA	2082591..2082974 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
SSU12_RS10385 (SSU12_2096)	recF	2082977..2084071 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
SSU12_RS10390 (SSU12_2097)	guaB	2084343..2085824 (-)	1482	WP_012028051.1	IMP dehydrogenase	-
SSU12_RS10395 (SSU12_2098)	trpS	2086056..2087081 (-)	1026	WP_012775414.1	tryptophan--tRNA ligase	-
SSU12_RS10400 (SSU12_2100)	-	2087436..2088308 (+)	873	WP_012775460.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=40729 SSU12_RS10385 WP_012028050.1 2082977..2084071(+) (recF) [Streptococcus suis SS12]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=40729 SSU12_RS10385 WP_012028050.1 2082977..2084071(+) (recF) [Streptococcus suis SS12]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442