Detailed information NTG0407274

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY31_RS10645
• Genome accession: NZ_CP046760
• Coordinates: 391720..392709 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain AM51552
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 386720..397709

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY31_RS10610	ftsB	386728..387009 (+)	282	WP_005455577.1	cell division protein FtsB	-
GPY31_RS10615	ispD	387011..387715 (+)	705	WP_020841271.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY31_RS10620	ispF	387733..388209 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY31_RS10625	truD	388256..389299 (+)	1044	WP_025552420.1	tRNA pseudouridine(13) synthase TruD	-
GPY31_RS10630	surE	389299..390075 (+)	777	WP_025536693.1	5'/3'-nucleotidase SurE	-
GPY31_RS10635	-	390075..390701 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY31_RS10640	-	390716..391639 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY31_RS10645	rpoS	391720..392709 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY31_RS10650	mutS	392788..395349 (-)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
GPY31_RS10655	pncC	395434..395916 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
GPY31_RS10660	recA	396117..397160 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=407274 GPY31_RS10645 WP_005478537.1 391720..392709(+) (rpoS) [Vibrio parahaemolyticus strain AM51552]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=407274 GPY31_RS10645 WP_005478537.1 391720..392709(+) (rpoS) [Vibrio parahaemolyticus strain AM51552]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCCAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851