Detailed information NTG0407249

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY20_RS19080
• Genome accession: NZ_CP046756
• Coordinates: 2557422..2558846 (+)
• Length: 474 a.a.
• NCBI ID: WP_158130380.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain 2015AW-0077
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2552422..2563846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY20_RS19055	cobT	2552591..2553619 (-)	1029	WP_158130378.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY20_RS19060	-	2553633..2554244 (-)	612	WP_154184500.1	flavin reductase family protein	-
GPY20_RS19065	-	2554629..2555312 (+)	684	WP_158130379.1	NAD(P)H-binding protein	-
GPY20_RS19070	-	2555513..2556892 (+)	1380	WP_020432565.1	L-cystine transporter	-
GPY20_RS19075	-	2556972..2557184 (-)	213	WP_047458980.1	hypothetical protein	-
GPY20_RS19080	sbcB	2557422..2558846 (+)	1425	WP_158130380.1	exodeoxyribonuclease I	Machinery gene
GPY20_RS19085	-	2558887..2559261 (+)	375	WP_020327588.1	CidA/LrgA family protein	-
GPY20_RS19090	-	2559252..2559932 (+)	681	WP_020327589.1	LrgB family protein	-
GPY20_RS19095	cdd	2560134..2561021 (+)	888	WP_020327590.1	cytidine deaminase	-
GPY20_RS19100	-	2561068..2563776 (-)	2709	WP_158130381.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54488.90 Da
• Isoelectric Point: 5.0763

>NTDB_id=407249 GPY20_RS19080 WP_158130380.1 2557422..2558846(+) (sbcB) [Vibrio fluvialis strain 2015AW-0077]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITDIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=407249 GPY20_RS19080 WP_158130380.1 2557422..2558846(+) (sbcB) [Vibrio fluvialis strain 2015AW-0077]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGTCAACTGCCCGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGACATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCATATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCGGAAGGTATTGTGTGGCCGGAAAACGATGAAGGTTTTACC
AGCTTCAAACTGGAGCATTTGTCGAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGACGTGATTGC
GACCATTGAACTGGCGAAAAAAGTCAAAGCGGCACAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTACCCATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
AGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAATTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.298	99.789	0.831