Detailed information NTG0407223

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY20_RS08075
• Genome accession: NZ_CP046756
• Coordinates: 249992..250978 (-)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain 2015AW-0077
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 244992..255978

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY20_RS08055	recX	245036..245494 (-)	459	WP_047459347.1	recombination regulator RecX	-
GPY20_RS08060	recA	245564..246616 (-)	1053	WP_020330433.1	recombinase RecA	Machinery gene
GPY20_RS08065	pncC	246789..247277 (-)	489	WP_024374200.1	nicotinamide-nucleotide amidase	-
GPY20_RS08070	mutS	247362..249923 (+)	2562	WP_158129755.1	DNA mismatch repair protein MutS	-
GPY20_RS08075	rpoS	249992..250978 (-)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
GPY20_RS08080	nlpD	251050..251985 (-)	936	WP_158129756.1	murein hydrolase activator NlpD	-
GPY20_RS08085	-	251985..252611 (-)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY20_RS08090	surE	252604..253371 (-)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
GPY20_RS08095	truD	253364..254410 (-)	1047	WP_047459362.1	tRNA pseudouridine(13) synthase TruD	-
GPY20_RS08100	ispF	254442..254918 (-)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY20_RS08105	ispD	254921..255631 (-)	711	WP_158129757.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY20_RS08110	ftsB	255628..255909 (-)	282	WP_020330423.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=407223 GPY20_RS08075 WP_020429689.1 249992..250978(-) (rpoS) [Vibrio fluvialis strain 2015AW-0077]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=407223 GPY20_RS08075 WP_020429689.1 249992..250978(-) (rpoS) [Vibrio fluvialis strain 2015AW-0077]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTACTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCTCTGATGAACCAAACCCGTACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGTTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887