Detailed information NTG0407221

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: GPY20_RS08060
• Genome accession: NZ_CP046756
• Coordinates: 245564..246616 (-)
• Length: 350 a.a.
• NCBI ID: WP_020330433.1
• Uniprot ID: S7JHV1
• Organism: Vibrio fluvialis strain 2015AW-0077
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 240564..251616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY20_RS08040	csrA	240582..240779 (-)	198	WP_004415691.1	carbon storage regulator CsrA	-
GPY20_RS08045	-	240872..242059 (-)	1188	WP_020330436.1	aspartate kinase	-
GPY20_RS08050	alaS	242266..244848 (-)	2583	WP_158129754.1	alanine--tRNA ligase	-
GPY20_RS08055	recX	245036..245494 (-)	459	WP_047459347.1	recombination regulator RecX	-
GPY20_RS08060	recA	245564..246616 (-)	1053	WP_020330433.1	recombinase RecA	Machinery gene
GPY20_RS08065	pncC	246789..247277 (-)	489	WP_024374200.1	nicotinamide-nucleotide amidase	-
GPY20_RS08070	mutS	247362..249923 (+)	2562	WP_158129755.1	DNA mismatch repair protein MutS	-
GPY20_RS08075	rpoS	249992..250978 (-)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 38105.59 Da
• Isoelectric Point: 4.9925

>NTDB_id=407221 GPY20_RS08060 WP_020330433.1 245564..246616(-) (recA) [Vibrio fluvialis strain 2015AW-0077]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIS
AAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGVKHKLVEKAGAWYSYNGDKIGQGKANACKYLRENPEVAKFIDS
KLREMLLNPEQVAVNEEPEFGSVPEQEEEF

Nucleotide

• Length: 1053 bp

>NTDB_id=407221 GPY20_RS08060 WP_020330433.1 245564..246616(-) (recA) [Vibrio fluvialis strain 2015AW-0077]
ATGGACGAGAACAAACAGAAGGCTCTGGCCGCAGCCCTGGGTCAAATTGAAAAGCAATTCGGTAAAGGTTCTATCATGCG
CTTGGGTGACAACCGCACGATGGACGTAGAAACGATTTCTACCGGTTCACTTTCTCTGGATATCGCCTTGGGTGCGGGTG
GCCTGCCAATGGGTCGTATCGTGGAAATCTACGGTCCGGAGTCATCAGGTAAAACGACGCTGACTCTGGAACTGATCTCA
GCGGCTCAGCGCGAAGGTAAAACATGTGCCTTCATCGATGCAGAGCACGCTCTGGATCCAGTTTATGCTCGTCGTCTGGG
CGTGAAAATTGATGAACTGCTGGTGTCTCAGCCAGATACTGGTGAACAGGCGCTGGAAATCTGTGATGCATTGGCGCGTT
CAGGTGCTGTTGACGTTATCGTCGTTGACTCGGTTGCAGCACTGACACCAAAAGCGGAAATTGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTGCAAGCGCGTATGCTGTCGCAAGCGATGCGTAAACTGACGGGTAACCTGAAACAGTCAAACTGTAT
GTGCATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACCACTACTGGTGGTAACGCAC
TGAAATTCTACGCATCTGTTCGTCTGGATATTCGTCGTACCGGTTCTATCAAAGAAGGCGATGAAGTTGTCGGTAACGAA
ACTCGTATCAAAGTAGTGAAGAACAAGATTGCGGCACCATTTAAAGAAGCCAACACGCAAATCATGTACGGCCAAGGCTT
TAACCGTGAAGGTGAGCTGATTGAACTGGGCGTGAAGCACAAGCTGGTCGAAAAAGCAGGTGCTTGGTACAGCTACAACG
GCGACAAGATCGGTCAGGGTAAAGCGAACGCGTGCAAATACCTGAGAGAAAATCCTGAAGTGGCTAAATTCATCGACAGC
AAACTGCGTGAAATGCTGCTGAACCCTGAACAAGTTGCGGTAAACGAAGAGCCGGAATTTGGTTCAGTGCCAGAACAAGA
AGAAGAGTTTTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: S7JHV1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	90.652	100	0.914
recA	Vibrio cholerae O1 biovar El Tor strain E7946	90.652	100	0.914
recA	Acinetobacter baumannii D1279779	71.304	98.571	0.703
recA	Acinetobacter baylyi ADP1	71.848	97.429	0.7
recA	Pseudomonas stutzeri DSM 10701	74.924	93.429	0.7
recA	Glaesserella parasuis strain SC1401	71.601	94.571	0.677
recA	Neisseria gonorrhoeae MS11	68.712	93.143	0.64
recA	Neisseria gonorrhoeae MS11	68.712	93.143	0.64
recA	Neisseria gonorrhoeae strain FA1090	68.712	93.143	0.64
recA	Ralstonia pseudosolanacearum GMI1000	72.026	88.857	0.64
recA	Streptococcus mitis SK321	59.829	100	0.6
recA	Streptococcus mitis NCTC 12261	59.544	100	0.597
recA	Streptococcus pneumoniae R6	59.714	100	0.597
recA	Streptococcus pneumoniae TIGR4	59.714	100	0.597
recA	Streptococcus pneumoniae Rx1	59.714	100	0.597
recA	Streptococcus pneumoniae D39	59.714	100	0.597
recA	Helicobacter pylori 26695	59.706	97.143	0.58
recA	Helicobacter pylori strain NCTC11637	59.412	97.143	0.577
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.323	91.143	0.577
recA	Bacillus subtilis subsp. subtilis str. 168	62.305	91.714	0.571
recA	Streptococcus mutans UA159	61.538	92.857	0.571
recA	Streptococcus pyogenes NZ131	61.231	92.857	0.569
recA	Lactococcus lactis subsp. cremoris KW2	59.403	95.714	0.569
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.639	94.857	0.566
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.371	91.714	0.563
recA	Latilactobacillus sakei subsp. sakei 23K	60.125	91.714	0.551