Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY21_RS11205 Genome accession   NZ_CP046754
Coordinates   493049..493663 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2015AW-0174     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 488049..498663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY21_RS11195 aceF 489325..491226 (+) 1902 WP_005493990.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPY21_RS11200 lpdA 491495..492922 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  GPY21_RS11205 opaR 493049..493663 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  GPY21_RS11210 hpt 493982..494512 (+) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  GPY21_RS11215 can 494585..495253 (-) 669 WP_005462578.1 carbonate dehydratase -
  GPY21_RS11220 - 495537..497207 (+) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  GPY21_RS11230 - 497460..498377 (+) 918 WP_005493995.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=407188 GPY21_RS11205 WP_005479697.1 493049..493663(-) (opaR) [Vibrio parahaemolyticus strain 2015AW-0174]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=407188 GPY21_RS11205 WP_005479697.1 493049..493663(-) (opaR) [Vibrio parahaemolyticus strain 2015AW-0174]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment